Evidence map›Paper›PMID 20494994›Full record

ArticleJournal of bacteriology2010

Variation in Streptococcus pyogenes NAD+ glycohydrolase is associated with tissue tropism.

David J Riddle, Debra E Bessen, Michael G Caparon

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Molecular characterization ofMicrobial genomics · 2024
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  4. Article
  5. Article
  6. Article
  7. Microorganisms · 2022
    Article
  8. Article
  9. TheJournal of bacteriology · 2021
    Article
  10. Group AFrontiers in cellular and infection microbiology · 2019
    Article
  11. Review
  12. Binding of NADmBio · 2017
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Molecular epidemiology and genomics of group A Streptococcus.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

David J RiddleDepartment of Internal Medicine, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, Missouri 63110, USA.
Debra E Bessen
Michael G Caparon
Washington University in St. Louis · US

Funding

Infectious Diseases/Basic Microbial Pathogenic MechanismsT32AI007172 · NIAID · WASHINGTON UNIVERSITY · PI Daniel E. Goldberg, JENNIFER A PHILIPS · 1985 to 2026
$13.0M
Cytolysin-mediated translocation in S.pyogenes virulenceR01AI064721 · NIAID · WASHINGTON UNIVERSITY · PI CAPARON, MICHAEL G. · 2005 to 2014
$3.3M
Population genomics of Streptococcus pyogenesR01AI065572 · NIAID · NEW YORK MEDICAL COLLEGE · PI BESSEN, DEBRA E · 2005 to 2009
$1.8M
NIAID NIH HHS R01 AI064721NIAID NIH HHS R01-AI064721NIAID NIH HHS R01 AI065572NIAID NIH HHS R01-AI065572NIAID NIH HHS T32 AI007172NIAID NIH HHS T32-AI007172
6 · The paper itself

Abstract

Streptococcus pyogenes is an important pathogen that causes a variety of diseases. The most common infections involve the throat (pharyngitis) or skin (impetigo); however, the factors that determine tissue tropism and severity are incompletely understood. The S. pyogenes NAD(+) glycohydrolase (SPN) is a virulence factor that has been implicated in contributing to the pathogenesis of severe infections. However, the role of SPN in determining the bacterium's tissue tropism has not been evaluated. In this report, we examine the sequences of spn and its endogenous inhibitor ifs from a worldwide collection of S. pyogenes strains. Analysis of average pairwise nucleotide diversity, average number of nucleotide differences, and ratio of nonsynonymous to synonymous substitutions revealed significant diversity in spn and ifs. Application of established models of molecular evolution shows that SPN is evolving under positive selection and diverging into NAD(+) glycohydrolase (NADase)-active and -inactive subtypes. Additionally, the NADase-inactive SPN subtypes maintain the characteristics of a functional gene while ifs becomes a pseudogene. Thus, NADase-inactive SPN continues to evolve under functional constraint. Furthermore, NADase activity did not correlate with invasive disease in our collection but was associated with tissue tropism. The ability to cause infection at both the pharynx and the skin ("generalist" strains) is correlated with NADase-active SPN, while the preference for causing infection at either the throat or the skin ("specialist" strains) is associated with NADase-inactive SPN. These findings suggest that SPN has a NADase-independent function and prompt a reevaluation of the role of SPN in streptococcal pathogenesis.

Indexed as

Genetic VariationAllelesAmino Acid SequenceBase SequenceDNA, BacterialGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicHaplotypesMolecular Sequence DataNAD+ NucleosidaseStreptococcus pyogenesTropismDNA, BacterialNAD+ Nucleosidase

Identifiers

PMID20494994
PMCPMC2897333
OpenAlexW2159637763

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.