Evidence map›Paper›PMID 20493855›Full record

ArticleFEBS letters2010

Direct contacts between conserved motifs of different subunits provide major contribution to active site organization in human and mycobacterial dUTPases.

Eniko Takács, Gergely Nagy, Ibolya Leveles, Veronika Harmat, Anna Lopata, Judit Tóth, Beáta G Vértessy

Abstract read
In one paragraph

Article in FEBS letters, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Eniko TakácsInstitute of Enzymology, BRC, Hungarian Academy of Sciences, Budapest, Hungary.
Gergely Nagy
Ibolya Leveles
Veronika Harmat
Anna Lopata
Judit Tóth
Beáta G Vértessy

Funding

Mycobacterium tuberculosis dUTPase as a tool in disease controlR01TW008130 · FIC · HUN-REN TERMESZETTUDOMANYI KUTATOKOZPONT · PI TOTH, JUDIT · 2008 to 2012
$252k
FIC NIH HHS 1R01TW008130-01FIC NIH HHS R01 TW008130Howard Hughes Medical Institute 55000342Howard Hughes Medical Institute 55005628
6 · The paper itself

Abstract

dUTP pyrophosphatases (dUTPases) are essential for genome integrity. Recent results allowed characterization of the role of conserved residues. Here we analyzed the Asp/Asn mutation within conserved Motif I of human and mycobacterial dUTPases, wherein the Asp residue was previously implicated in Mg(2+)-coordination. Our results on transient/steady-state kinetics, ligand binding and a 1.80 A resolution structure of the mutant mycobacterial enzyme, in comparison with wild type and C-terminally truncated structures, argue that this residue has a major role in providing intra- and intersubunit contacts, but is not essential for Mg(2+) accommodation. We conclude that in addition to the role of conserved motifs in substrate accommodation, direct subunit interaction between protein atoms of active site residues from different conserved motifs are crucial for enzyme function.

Indexed as

Amino Acid MotifsBacterial ProteinsBinding SitesHumansKineticsProtein Structure, TertiaryPyrophosphatasesBacterial ProteinsdUTP pyrophosphatasePyrophosphatases

Identifiers

PMID20493855
PMCPMC2922844

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.