Evidence map›Paper›PMID 20493253›Full record

ArticleResearch in microbiology2010

Repression of aerobic leukotoxin transcription by integration host factor in Aggregatibacter actinomycetemcomitans.

David Kolodrubetz, Linda Phillips, Alex Burgum

Abstract read
In one paragraph

Article in Research in microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Aggregatibacter actinomycetemcomitans: From Basic to Advanced Research.Advances in experimental medicine and biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

David KolodrubetzDepartment of Microbiology and Immunology, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Dr., San Antonio, TX 78229-3900, USA. kolodrubetz@uthscsa.edu
Linda Phillips
Alex Burgum
The University of Texas Health Science Center at San Antonio · US

Funding

Anaerobic Regulatory Pathways in a PeriodontopathogenR01DE015625 · NIDCR · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI KOLODRUBETZ, DAVID J · 2004 to 2006
$978k
REGULATION OF LEUKOTOXIN IN A ACTINOMYCETEMCOMITANSR01DE010731 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI KOLODRUBETZ, DAVID J · 1993 to 1999
–
NIDCR NIH HHS DE10731NIDCR NIH HHS DE15625NIDCR NIH HHS R01 DE010731NIDCR NIH HHS R01 DE015625
6 · The paper itself

Abstract

Aggregatibacter actinomycetemcomitans has been implicated as the primary etiologic agent in localized aggressive periodontitis. This bacterium produces a leukotoxin which may help the bacterium evade the host immune response. Leukotoxin transcription is induced when A. actinomycetemcomitans is grown anaerobically, as in the periodontal pocket. Previously, a 35 bp oxygen-response-element (ORE) was shown to be responsible for oxygen regulation at the leukotoxin promoter. However, the gene's transcription is not controlled by Fnr or ArcA, the major oxygen regulators in other bacteria. To identify the potentially novel protein(s) that regulate leukotoxin transcription, protein extracts of A. actinomycetemcomitans were tested for ORE binding by mobility shift assays; one ORE-specific binding complex was found. Standard fractionation protocols and protein sequencing identified the ORE binding protein as integration host factor (IHF). DNaseI protection assays showed that the IHF binding site overlaps the first half of the ORE. To assess the effect of IHF on leukotoxin synthesis, an A. actinomycetemcomitans deletion mutant in ihfB was constructed and characterized. Interestingly, leukotoxin RNA and protein synthesis was de-repressed in the ihf mutant, although leukotoxin synthesis in still oxygen-regulated in the mutant cells. Thus, IHF plays a direct role in repressing leukotoxin transcription, but another protein is also involved in regulating leukotoxin expression in response to oxygen.

Indexed as

Gene Expression Regulation, BacterialTranscription, GeneticAerobiosisAggregatibacter actinomycetemcomitansAnaerobiosisBacterial ProteinsBinding SitesDNA, RecombinantGenes, BacterialIntegration Host FactorsPolymerase Chain ReactionPromoter Regions, GeneticRNA, BacterialBacterial ProteinsDNA, RecombinantIntegration Host FactorsRNA, Bacterial

Identifiers

PMID20493253
PMCPMC2933953
OpenAlexW2032879599

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.