Evidence map›Paper›PMID 20488795›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2010

Evolutionarily conserved TCR binding sites, identification of T cells in primary lymphoid tissues, and surprising trans-rearrangements in nurse shark.

Michael F Criscitiello, Yuko Ohta, Mark Saltis, E Churchill McKinney, Martin F Flajnik

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. The unexpected role of nurse shark pancreas as a secondary lymphoid organ.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Biology · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. An Ancient, MHC-Linked, Nonclassical Class I Lineage in Cartilaginous Fish.Journal of immunology (Baltimore, Md. : 1950) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Michael F CriscitielloDepartment of Microbiology and Immunology, University of Maryland at Baltimore, Baltimore, MD 21201, USA. mriscitiello@cvm.tamu.edu
Yuko Ohta
Mark Saltis
E Churchill McKinney
Martin F Flajnik
University of Maryland, Baltimore · US

Funding

EVOLUTION OF THE MAJOR HISTOCOMPATIBILITY COMPLEXR01RR006603 · NCRR · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FLAJNIK, MARTIN F · 1991 to 2011
$3.4M
Origins of specialized Mucosal Lymphocyte Subsets and Immunoglobulin IsotypesK22AI073888 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI CRISCITIELLO, MICHAEL FREDERICK · 2008 to 2009
$270k
Origins of T Helper Cell Function in Adaptive ImmunityF32AI056963 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI CRISCITIELLO, MICHAEL FREDERICK · 2003 to 2005
$131k
NCRR NIH HHS R01 RR006603NCRR NIH HHS R01RR006603NIAID NIH HHS AI56963NIAID NIH HHS F32 AI056963NIAID NIH HHS K22 AI073888
6 · The paper itself

Abstract

Cartilaginous fish are the oldest animals that generate RAG-based Ag receptor diversity. We have analyzed the genes and expressed transcripts of the four TCR chains for the first time in a cartilaginous fish, the nurse shark (Ginglymostoma cirratum). Northern blotting found TCR mRNA expression predominantly in lymphoid and mucosal tissues. Southern blotting suggested translocon-type loci encoding all four chains. Based on diversity of V and J segments, the expressed combinatorial diversity for gamma is similar to that of human, alpha and beta may be slightly lower, and delta diversity is the highest of any organism studied to date. Nurse shark TCRdelta have long CDR3 loops compared with the other three chains, creating binding site topologies comparable to those of mammalian TCR in basic paratope structure; additionally, nurse shark TCRdelta CDR3 are more similar to IgH CDR3 in length and heterogeneity than to other TCR chains. Most interestingly, several cDNAs were isolated that contained IgM or IgW V segments rearranged to other gene segments of TCRdelta and alpha. Finally, in situ hybridization experiments demonstrate a conservation of both alpha/beta and gamma/delta T cell localization in the thymus across 450 million years of vertebrate evolution, with gamma/delta TCR expression especially high in the subcapsular region. Collectively, these data make the first cellular identification of TCR-expressing lymphocytes in a cartilaginous fish.

Indexed as

Amino Acid SequenceAnimalsBlotting, NorthernBlotting, SouthernConserved SequenceGene ExpressionGene Expression ProfilingGene Rearrangement, alpha-Chain T-Cell Antigen ReceptorGene Rearrangement, delta-Chain T-Cell Antigen ReceptorHumansIn Situ HybridizationLymphoid TissueMolecular Sequence DataPhylogenyReceptors, Antigen, T-CellReverse Transcriptase Polymerase Chain ReactionReceptors, Antigen, T-Cell

Identifiers

PMID20488795
PMCPMC3222143
OpenAlexW2140466922

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.