ArticleBMC plant biology2010
Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.).
Article in BMC plant biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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26 citing papers in PubMed, 74 citations in OpenAlex.
- Identification and co-expression network analysis of plumule-preferentially expressed genes in Oryza sativa.Genes & genomics · 2023Article
- Physiological Responses of Cigar Tobacco Crop to Nitrogen Deficiency and Genome-Wide Characterization of thePlants (Basel, Switzerland) · 2022Article
- Systematic Investigation and Expression Profiles of the Nitrate Transporter 1/Peptide Transporter Family (NPF) in Tea Plant (International journal of molecular sciences · 2022Article
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- Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice.Scientific reports · 2021Article
- Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus.BMC genomics · 2020Article
- Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency.BMC plant biology · 2020Article
- Deciphering Genetic Architecture of Adventitious Root and Related Shoot Traits inInternational journal of molecular sciences · 2019Article
- Genome-Wide Identification and Analysis of Apple NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER Family (NPF) Genes Reveals MdNPF6.5 Confers High Capacity for Nitrogen Uptake under Low-Nitrogen Conditions.International journal of molecular sciences · 2018Article
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- Population genomic analysis of the rice blast fungus reveals specific events associated with expansion of three main clades.The ISME journal · 2018Article
- Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies.BMC genomics · 2018Article
- Two Splicing Variants ofFrontiers in plant science · 2018Article
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- Identification of arbuscular mycorrhiza-inducible Nitrate Transporter 1/Peptide Transporter Family (NPF) genes in rice.Mycorrhiza · 2018Article
- Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis).BMC plant biology · 2017Article
- The Rice Peptide TransporterFrontiers in plant science · 2017Article
- QTL Mapping by Whole Genome Re-sequencing and Analysis of Candidate Genes for Nitrogen Use Efficiency in Rice.Frontiers in plant science · 2017Article
- Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.Scientific reports · 2015Article
- Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants.Annals of botany · 2014Article
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPeptide transporter (PTR) family whose member can transport di-/tripeptides and nitrate is important for plant growth and development. Although the rice (Oryza sativa L.) genome has been sequenced for a few years, a genomic survey, characterization and expression profile analysis of the PTR family in this species has not been reported.
resultsIn this study, we report a comprehensive identification, characterization, phylogenetic and evolutionary analysis of 84 PTR family members in rice (OsPTR) as well as their whole-life expression patterns. Chromosomal distribution and sequence analysis indicate that nearly 70% of OsPTR members are involved in the tandem and segmental duplication events. It suggests that genome duplication might be a major mechanism for expansion of this family. Highly conserved motifs were identified in most of the OsPTR members. Meanwhile, expression profile of OsPTR genes has been analyzed by using Affymetrix rice microarray and real-time PCR in two elite hybrid rice parents, Minghui 63 and Zhenshan 97. Seven genes are found to exhibit either preferential or tissue-specific expression during different development stages of rice. Under phytohormone (NAA, GA3 and KT) and light/dark treatments, 14 and 17 OsPTR genes are differentially expressed respectively. Ka/Ks analysis of the paralogous OsPTR genes indicates that purifying selection plays an important role in function maintenance of this family.
conclusionThese investigations add to our understanding of the importance of OsPTR family members and provide useful reference for selecting candidate genes for functional validation studies of this family in rice.
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