Evidence map›Paper›PMID 20487280›Full record

ArticleMolecular microbiology2010

Phase variation controls expression of Salmonella lipopolysaccharide modification genes by a DNA methylation-dependent mechanism.

S E Broadbent, M R Davies, M W van der Woude

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
8.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 144 citations in OpenAlex.

  1. Article
  2. mBio · 2026
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  4. Review
  5. The intestinal environment potentiates bacteriophage adaptation in response to phenotypic resistance inProceedings of the National Academy of Sciences of the United States of America · 2025
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  6. Article
  7. Article
  8. Article
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  10. Advantage of an epigenetic switch in response to alternate environments.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Review
  12. Article
  13. More than one way to add a sugar into bacterial polysaccharides.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Review
  15. Article
  16. Frontiers in cellular and infection microbiology · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Analysis ofFrontiers in cellular and infection microbiology · 2023
    Review

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

S E BroadbentCentre for Immunology and Infection, Hull York Medical School and the Department of Biology, University of York, York, UK.
M R Davies
M W van der Woude
University of York · GB

Funding

Biotechnology and Biological Sciences Research CouncilWellcome TrustWellcome Trust WT080086MA
6 · The paper itself

Abstract

The O-antigen of Salmonella lipopolysaccharide is a major antigenic determinant and its chemical composition forms the basis for Salmonella serotyping. Modifications of the O-antigen that can affect the serotype include those carried out by the products of glycosyltransferase operons (gtr), which are present on specific Salmonella and phage genomes. Here we show that expression of the gtr genes encoded by phage P22 that confers the O1 serotype is under the control of phase variation. This phase variation occurs by a novel epigenetic mechanism requiring OxyR in conjunction with the DNA methyltransferase Dam. OxyR is an activator or a repressor of the system depending on which of its two binding sites in the gtr regulatory region is occupied. Binding is decreased by methylation at Dam target sequences in either site, and this confers heritability of the expression state to the system. Most Salmonella gtr operons share the key regulatory elements that are identified here as essential for this epigenetic phase variation.

Indexed as

DNA MethylationEpigenesis, GeneticBacterial ProteinsBacteriophage P22Base SequenceDNA, BacterialGene Expression Regulation, BacterialGlycosyltransferasesMolecular Sequence DataMultigene FamilyMutagenesis, Site-DirectedO AntigensOperonPromoter Regions, GeneticRepressor ProteinsSalmonella typhimuriumBacterial ProteinsDam methyltransferaseDNA, BacterialGlycosyltransferasesO AntigensRepressor ProteinsSite-Specific DNA-Methyltransferase (Adenine-Specific)

Identifiers

PMID20487280
PMCPMC2909390
OpenAlexW1697620700

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.