Evidence map›Paper›PMID 20486124›Full record

ArticleEuropean journal of immunology2010

The dynamic TCRδ: TCRδ chains in the amphibian Xenopus tropicalis utilize antibody-like V genes.

Zuly E Parra, Yuko Ohta, Michael F Criscitiello, Martin F Flajnik, Robert D Miller

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in European journal of immunology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. The amphibian immune system.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  9. Characterization of immunoglobulinFrontiers in immunology · 2023
    Article
  10. Article
  11. Review
  12. Article
  13. TR Locus Annotation and Characteristics ofFrontiers in immunology · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. A cold-blooded view of adaptive immunity.Nature reviews. Immunology · 2018
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Zuly E ParraCenter for Evolutionary and Theoretical Immunology, Department of Biology, University of New Mexico, Albuquerque, NM 87131-0001, USA.
Yuko Ohta
Michael F Criscitiello
Martin F Flajnik
Robert D Miller
University of Maryland, Baltimore · USEvolutionary Genomics (United States) · USUniversity of New Mexico · US

Funding

UNM COBRE: THEORETICAL STUDY OF SPECIFICITY OF RNA SILENCING MECHANISMP20RR018754 · NCRR · UNIVERSITY OF NEW MEXICO · PI CUNNINGHAM, CHARLES · 2003 to 2011
$16.7M
EVOLUTION OF THE MAJOR HISTOCOMPATIBILITY COMPLEXR01RR006603 · NCRR · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FLAJNIK, MARTIN F · 1991 to 2011
$3.4M
Origins of specialized Mucosal Lymphocyte Subsets and Immunoglobulin IsotypesK22AI073888 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI CRISCITIELLO, MICHAEL FREDERICK · 2008 to 2009
$270k
NCIRD CDC HHS IP20RR18754NCRR NIH HHS P20 RR018754NCRR NIH HHS R01 RR006603NCRR NIH HHS RR00603NIAID NIH HHS K22 AI073888
6 · The paper itself

Abstract

The content and organization of the Xenopus tropicalis TCRα/δ locus was determined. This locus is highly conserved among tetrapods, with the genes encoding the TCRδ chains embedded with those encoding TCRα. However, the frog TCRα/δ is unusual in that it contains V genes that appear indistinguishable from those in the IgH locus (VH). These V genes, termed VHδ, make up 70% of the V genes at the TCRδ locus and are expressed exclusively in TCRδ chains. Finding TCRδ chains that use antibody-like V domains in frogs is similar to the situation in shark TCRδ variants and TCRμ in marsupials. These results suggest that such unconventional TCR may be more widespread across vertebrate lineages than originally thought and raise the possibility of previously unrealized subsets of T cells. We also revealed close linkage of TCRα/δ, IgH, and Igλ in Xenopus which, in combination with linkage analyses in other species, is consistent with the previous models for the emergence of these antigen receptor loci.

Indexed as

XenopusAmino Acid SequenceAnimalsAntibodiesChromosome MappingDNAEvolution, MolecularGene Expression ProfilingGene Rearrangement, delta-Chain T-Cell Antigen ReceptorGenes, T-Cell Receptor deltaImmunoglobulin Variable RegionMolecular StructurePhylogenyReceptors, Antigen, T-Cell, gamma-deltaXenopus ProteinsAntibodiesDNAImmunoglobulin Variable RegionReceptors, Antigen, T-Cell, gamma-deltaXenopus Proteins

Identifiers

PMID20486124
PMCPMC3086071
OpenAlexW2156019669

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.