Evidence map›Paper›PMID 20485507›Full record

ArticlePloS one2010

A male with unilateral microphthalmia reveals a role for TMX3 in eye development.

Ryan Chao, Linda Nevin, Pooja Agarwal, Jan Riemer, Xiaoyang Bai, Allen Delaney, Matthew Akana, Nelson JimenezLopez, Tanya Bardakjian, Adele Schneider and 10 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
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  18. Array comparative genomic hybridization analysis in patients with anophthalmia, microphthalmia, and coloboma.Genetics in medicine : official journal of the American College of Medical Genetics · 2011
    Article
  19. Article
  20. Toward a better understanding of human eye disease insights from the zebrafish, Danio rerio.Progress in molecular biology and translational science · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 6 countries.

Ryan ChaoDivision of Genetics, Department of Pediatrics, University of California San Francisco, San Francisco, California, United States of America.
Linda Nevin
Pooja Agarwal
Jan Riemer
Xiaoyang Bai
Allen Delaney
Matthew Akana
Nelson JimenezLopez
Tanya Bardakjian
Adele Schneider
Nicolas Chassaing
Daniel F Schorderet
David FitzPatrick
Pui-yan Kwok
Lars Ellgaard
Douglas B Gould
Yan Zhang
Jarema Malicki
Herwig Baier
Anne Slavotinek
University of California, San Francisco · USEinstein Medical Center Philadelphia · USHarvard University · USUniversity of Copenhagen · DKUniversity of San Francisco · USÉcole Polytechnique Fédérale de Lausanne · CHGenome British Columbia · CAUniversité de Toulouse · FRWestern General Hospital · GB

Funding

UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Rapid-Prototyping and Design CoreP30EY002162 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ULLIAN, ERIK M · 1985 to 2024
$16.8M
Molecular Genetic Analysis of Congenital Diaphragmatic HerniaK08HD053476 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SLAVOTINEK, ANNE M. · 2007 to 2011
$625k
Genetic analysis of congenital diaphragmatic herniaR03HD049411 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SLAVOTINEK, ANNE M. · 2005 to 2006
$150k
NCRR NIH HHS UL1 RR024131NEI NIH HHS EY02162NEI NIH HHS P30 EY002162NICHD NIH HHS K08 HD053476NICHD NIH HHS K08HD053476-01A1NICHD NIH HHS R03 HD049411PHS HHS 5R03 HDO49411-02
6 · The paper itself

Abstract

Anophthalmia and microphthalmia are important birth defects, but their pathogenesis remains incompletely understood. We studied a patient with severe unilateral microphthalmia who had a 2.7 Mb deletion at chromosome 18q22.1 that was inherited from his mother. In-situ hybridization showed that one of the deleted genes, TMX3, was expressed in the retinal neuroepithelium and lens epithelium in the developing murine eye. We re-sequenced TMX3 in 162 patients with anophthalmia or microphthalmia, and found two missense substitutions in unrelated patients: c.116G>A, predicting p.Arg39Gln, in a male with unilateral microphthalmia and retinal coloboma, and c.322G>A, predicting p.Asp108Asn, in a female with unilateral microphthalmia and severe micrognathia. We used two antisense morpholinos targeted against the zebrafish TMX3 orthologue, zgc:110025, to examine the effects of reduced gene expression in eye development. We noted that the morphant larvae resulting from both morpholinos had significantly smaller eye sizes and reduced labeling with islet-1 antibody directed against retinal ganglion cells at 2 days post fertilization. Co-injection of human wild type TMX3 mRNA rescued the small eye phenotype obtained with both morpholinos, whereas co-injection of human TMX3(p.Arg39Gln) mutant mRNA, analogous to the mutation in the patient with microphthalmia and coloboma, did not rescue the small eye phenotype. Our results show that haploinsufficiency for TMX3 results in a small eye phenotype and represents a novel genetic cause of microphthalmia and coloboma. Future experiments to determine if other thioredoxins are important in eye morphogenesis and to clarify the mechanism of function of TMX3 in eye development are warranted.

Indexed as

AnimalsAnophthalmosBase PairingBase SequenceColobomaDNA Mutational AnalysisEyeGene Expression Regulation, DevelopmentalHomeodomain ProteinsHumansInfantIn Situ HybridizationLarvaLIM-Homeodomain ProteinsMaleMiceHomeodomain Proteinsinsulin gene enhancer binding protein Isl-1LIM-Homeodomain ProteinsOligonucleotides, AntisenseProtein Disulfide-IsomerasesRNA, MessengerTMX3 protein, humanTranscription Factors

Identifiers

PMID20485507
PMCPMC2868029
OpenAlexW2164628276

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.