Evidence map›Paper›PMID 20485428›Full record

ArticleNature2010

Chemical genetics of Plasmodium falciparum.

W Armand Guiguemde, Anang A Shelat, David Bouck, Sandra Duffy, Gregory J Crowther, Paul H Davis, David C Smithson, Michele Connelly, Julie Clark, Fangyi Zhu and 25 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 291 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
291citing papers in PubMed, 1 pooled it
65.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

291 citing papers in PubMed, 1 synthesis or guideline pooled it, 567 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
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  11. Review
  12. Article
  13. Optimization of diastereomeric dihydropyridines as antimalarials.European journal of medicinal chemistry · 2024
    Article
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  18. Review
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231 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

35 authors at 14 institutions in 5 countries.

W Armand GuiguemdeDepartment of Chemical Biology and Therapeutics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Anang A Shelat
David Bouck
Sandra Duffy
Gregory J Crowther
Paul H Davis
David C Smithson
Michele Connelly
Julie Clark
Fangyi Zhu
María B Jiménez-Díaz
María S Martinez
Emily B Wilson
Abhai K Tripathi
Jiri Gut
Elizabeth R Sharlow
Ian Bathurst
Farah El Mazouni
Joseph W Fowble
Isaac Forquer
Paula L McGinley
Steve Castro
Iñigo Angulo-Barturen
Santiago Ferrer
Philip J Rosenthal
Joseph L Derisi
David J Sullivan
John S Lazo
David S Roos
Michael K Riscoe
Margaret A Phillips
Pradipsinh K Rathod
Wesley C Van Voorhis
Vicky M Avery
R Kiplin Guy
St. Jude Children's Research Hospital · USUniversity of Washington · USGlaxoSmithKline (Spain) · ESUniversity of California, San Francisco · USGriffith University · AUJohns Hopkins University · USPortland VA Medical Center · USRutgers, The State University of New Jersey · USThe University of Texas Southwestern Medical Center · USUniversity of Pennsylvania · USUniversity of Pittsburgh · USGlaxoSmithKline (Netherlands) · NLMedicines for Malaria Venture · CHSan Francisco General Hospital · US

Funding

University of Pittsburgh Clinical and Translational Science InstituteUL1TR000005 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2012 to 2015
$50.8M
YEAST THREONINE &SERINE KINASESP41RR001614 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ORTIZ DE MONTELLANO, PAUL R · 1985 to 2011
$24.1M
TRADITIONAL AND FLUOROUS SYNTHESIS APPROACHES TO DICTYOSTATIN ANTICANCER AGENTSP01CA078039 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI EISEMAN, JULIE L. · 1998 to 2009
$9.9M
X-RAY CRYSTALLOGRAPHYP01AI035707 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BRINEN, LINDA S · 1995 to 2008
$7.8M
Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
Optimizing Novel Dihydroorotate Dehydrogenase Inhibitors for Treating MalariaU01AI075594 · NIAID · MEDICINES FOR MALARIA VENTURE · PI WATERSON, DAVID · 2007 to 2011
$5.5M
Development of Antimalarial Preclinical CandidatesU01AI075517 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GUY, RODNEY KIPLIN · 2007 to 2011
$5.4M
Novel Anti-Malarials by Combinatorial PharmacogenomicsU01AI053862 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DERISI, JOSEPH · 2002 to 2006
$4.3M
GENETIC DISSECTION OF TOXOPLASMA GONDIIR37AI028724 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROOS, DAVID S. · 1999 to 2008
$4.3M
Plasmodium Falciparum Metal MetabolismR01AI045774 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SULLIVAN, DAVID JOSEPH · 1999 to 2009
$2.3M
Targeting malarial dihydroorotate dehydrogenaseR01AI053680 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI PHILLIPS, MARGARET A. · 2004 to 2008
$1.7M
Glycogen Synthase Kinase-3 as a drug target for Trypanosoma bruceiR01AI080625 · NIAID · UNIVERSITY OF WASHINGTON · PI VAN VOORHIS, WESLEY C · 2009 to 2012
$1.5M
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR000005NCI NIH HHS CA78039NCI NIH HHS P01 CA078039NCRR NIH HHS P41 RR001614NIAID NIH HHS AI045774NIAID NIH HHS AI053680NIAID NIH HHS AI067921NIAID NIH HHS AI075517NIAID NIH HHS AI075594NIAID NIH HHS AI080625NIAID NIH HHS AI082617NIAID NIH HHS AI28724NIAID NIH HHS AI35707NIAID NIH HHS AI53862NIAID NIH HHS AI772682NIAID NIH HHS F32 AI077268NIAID NIH HHS P01 AI035707NIAID NIH HHS P01 AI067921NIAID NIH HHS R01 AI045774NIAID NIH HHS R01 AI053680NIAID NIH HHS R21 AI053680NIAID NIH HHS R37 AI028724NIAID NIH HHS R56 AI053680NIAID NIH HHS R56 AI082617NIAID NIH HHS U01 AI053862NIAID NIH HHS U01 AI075594
6 · The paper itself

Abstract

Malaria caused by Plasmodium falciparum is a disease that is responsible for 880,000 deaths per year worldwide. Vaccine development has proved difficult and resistance has emerged for most antimalarial drugs. To discover new antimalarial chemotypes, we have used a phenotypic forward chemical genetic approach to assay 309,474 chemicals. Here we disclose structures and biological activity of the entire library-many of which showed potent in vitro activity against drug-resistant P. falciparum strains-and detailed profiling of 172 representative candidates. A reverse chemical genetic study identified 19 new inhibitors of 4 validated drug targets and 15 novel binders among 61 malarial proteins. Phylochemogenetic profiling in several organisms revealed similarities between Toxoplasma gondii and mammalian cell lines and dissimilarities between P. falciparum and related protozoans. One exemplar compound displayed efficacy in a murine model. Our findings provide the scientific community with new starting points for malaria drug discovery.

Indexed as

Drug DiscoveryAnimalsAntimalarialsCell LineDrug Evaluation, PreclinicalDrug ResistanceDrug Therapy, CombinationErythrocytesHumansMalaria, FalciparumMicePhenotypePhylogenyPlasmodium falciparumReproducibility of ResultsSmall Molecule LibrariesAntimalarialsSmall Molecule Libraries

Identifiers

PMID20485428
PMCPMC2874979
OpenAlexW1993795323

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.