Evidence map›Paper›PMID 20485376›Full record

ArticleLeukemia2010

Mantle cell lymphoma: transcriptional regulation by microRNAs.

L Di Lisio, G Gómez-López, M Sánchez-Beato, C Gómez-Abad, M E Rodríguez, R Villuendas, B I Ferreira, A Carro, D Rico, M Mollejo and 8 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Leukemia, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 75 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. The miR-106a~363Oncotarget · 2017
    Article
  17. Article
  18. Review
  19. miRGate: a curated database of human, mouse and rat miRNA-mRNA targets.Database : the journal of biological databases and curation · 2015
    Article
  20. Challenges and opportunities of microRNAs in lymphomas.Molecules (Basel, Switzerland) · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

L Di LisioMolecular Pathology Programme, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.
G Gómez-López
M Sánchez-Beato
C Gómez-Abad
M E Rodríguez
R Villuendas
B I Ferreira
A Carro
D Rico
M Mollejo
M A Martínez
J Menárguez
A Díaz-Alderete
J Gil
J C Cigudosa
D G Pisano
M A Piris
N Martínez
Spanish National Cancer Research Centre · ESHospital General Universitario Gregorio Marañón · ESHospital Universitario 12 De Octubre · ESHospital Virgen de la Salud · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mantle cell lymphoma (MCL) pathogenesis is still partially unexplained. We investigate the importance of microRNA (miRNA) expression as an additional feature that influences MCL pathway deregulation and may be useful for predicting patient outcome. Twenty-three MCL samples, eight cell lines and appropriate controls were screened for their miRNAs and gene expression profiles and DNA copy-number changes. MCL patients exhibit a characteristic signature that includes 117 miRNA (false discovery rate <0.05). Combined analysis of miRNAs and the gene expression profile, paired with bioinformatics target prediction (miRBase and TargetScan), revealed a series of genes and pathways potentially targeted by a small number of miRNAs, including essential pathways for lymphoma survival such as CD40, mitogen-activated protein kinase and NF-kappaB. Functional validation in MCL cell lines demonstrated NF-kappaB subunit nuclear translocation to be regulated by the expression of miR-26a. The expression of 12 selected miRNAs was studied by quantitative PCR in an additional series of 54 MCL cases. Univariate analysis identified a single miRNA, miR-20b, whose lack of expression distinguished cases with a survival probability of 56% at 60 months. In summary, using a novel bioinformatics approach, this study identified miRNA changes that contribute to MCL pathogenesis and markers of potential utility in MCL diagnosis and clinical prognostication.

Indexed as

Gene Expression Regulation, NeoplasticTranscription, GeneticBiomarkers, TumorCase-Control StudiesFluorescent Antibody TechniqueGene Expression ProfilingHumansLymph NodesLymphoma, Mantle-CellMicroRNAsNF-kappa BOligonucleotide Array Sequence AnalysisPrognosisReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSurvival RateBiomarkers, TumorMicroRNAsMIRN20a microRNA, humanNF-kappa BRNA, Messenger

Identifiers

PMID20485376
OpenAlexW1994605118

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.