Evidence map›Paper›PMID 20484563›Full record

ArticleThe Journal of general virology2010

Mutational analysis of the latency-associated nuclear antigen DNA-binding domain of Kaposi's sarcoma-associated herpesvirus reveals structural conservation among gammaherpesvirus origin-binding proteins.

Soo-Jin Han, Jianhong Hu, Brian Pierce, Zhiping Weng, Rolf Renne

Abstract read
In one paragraph

Article in The Journal of general virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Kaposi's Sarcoma Herpesvirus Genome Persistence.Frontiers in microbiology · 2016
    Review
  4. KSHV Genome Replication and Maintenance.Frontiers in microbiology · 2016
    Review
  5. Article
  6. The 3D structure of Kaposi sarcoma herpesvirus LANA C-terminal domain bound to DNA.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Soo-Jin HanDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL 32610-3633, USA.
Jianhong Hu
Brian Pierce
Zhiping Weng
Rolf Renne
University of Florida Health · USBoston University · US

Funding

Studying the role of KSHV-encoded miRNAsR01CA119917 · NCI · UNIVERSITY OF FLORIDA · PI RENNE, ROLF F · 2008 to 2017
$3.2M
LANA AND CELLULAR GENE EXPRESSION IN KAPOSIS SARCOMAR01CA088763 · NCI · UNIVERSITY OF FLORIDA · PI RENNE, ROLF F · 2000 to 2015
$3.2M
Continual Development of Protein Docking AlgorithmsR01GM084884 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WENG, ZHIPING · 2009 to 2012
$1.2M
NCI NIH HHS R01 CA088763NCI NIH HHS R01 CA119917NCI NIH HHS R01 CA88763NIGMS NIH HHS R01 GM084884
6 · The paper itself

Abstract

The latency-associated nuclear antigen (LANA) of Kaposi's sarcoma-associated herpesvirus functions as an origin-binding protein (OBP) and transcriptional regulator. LANA binds the terminal repeats via the C-terminal DNA-binding domain (DBD) to support latent DNA replication. To date, the structure of LANA has not been solved. Sequence alignments among OBPs of gammaherpesviruses have revealed that the C terminus of LANA is structurally related to EBNA1, the OBP of Epstein-Barr virus. Based on secondary structure predictions for LANA(DBD) and published structures of EBNA1(DBD), this study used bioinformatics tools to model a putative structure for LANA(DBD) bound to DNA. To validate the predicted model, 38 mutants targeting the most conserved motifs, namely three alpha-helices and a conserved proline loop, were constructed and functionally tested. In agreement with data for EBNA1, residues in helices 1 and 2 mainly contributed to sequence-specific DNA binding and replication activity, whilst mutations in helix 3 affected replication activity and multimer formation. Additionally, several mutants were isolated with discordant phenotypes, which may aid further studies into LANA function. In summary, these data suggest that the secondary and tertiary structures of LANA and EBNA1 DBDs are conserved and are critical for (i) sequence-specific DNA binding, (ii) multimer formation, (iii) LANA-dependent transcriptional repression, and (iv) DNA replication.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsAntigens, ViralBinding SitesCell LineChlorocebus aethiopsConserved SequenceDNA ReplicationDNA, ViralElectrophoretic Mobility Shift AssayEpstein-Barr Virus Nuclear AntigensEvolution, MolecularGammaherpesvirinaeHerpesvirus 8, HumanHumansAntigens, ViralDNA, ViralEBV-encoded nuclear antigen 1Epstein-Barr Virus Nuclear Antigenslatency-associated nuclear antigenMutant ProteinsNuclear Proteins

Identifiers

PMID20484563
PMCPMC3066550
OpenAlexW2109937744

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.