Evidence map›Paper›PMID 20484372›Full record

ArticleNucleic acids research2010

The dimerization domain of SOX9 is required for transcription activation of a chondrocyte-specific chromatin DNA template.

Françoise Coustry, Chun-do Oh, Takako Hattori, Sankar N Maity, Benoit de Crombrugghe, Hideyo Yasuda

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Hypomorphic and dominant-negative impact of truncated SOX9 dysregulates Hedgehog-Wnt signaling, causing campomelia.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
  5. SOX9 in organogenesis: shared and unique transcriptional functions.Cellular and molecular life sciences : CMLS · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Françoise CoustryDepartment of Genetics, The University of Texas, MD Anderson Cancer Center, Houston, TX 77030, USA.
Chun-do Oh
Takako Hattori
Sankar N Maity
Benoit de Crombrugghe
Hideyo Yasuda
The University of Texas MD Anderson Cancer Center · US

Funding

Small Leucine Rich Proteoglycans in Skeletal BiologyP01AR042919 · NIAMS · UNIVERSITY OF TEXAS MD ANDERSON CAN CTR · PI HOOK, AXEL MAGNUS · 1996 to 2004
$6.7M
CONTROL OF CHONDROCYTE DIFFERENTIATIONR01AR053568 · NIAMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DE CROMBRUGGHE, BENOIT · 2006 to 2010
$2.0M
NIAMS NIH HHS AR042919NIAMS NIH HHS AR053568
6 · The paper itself

Abstract

Mutations in SOX9, a gene essential for chondrocyte differentiation cause the human disease campomelic dysplasia (CD). To understand how SOX9 activates transcription, we characterized the DNA binding and cell-free transcription ability of wild-type SOX9 and a dimerization domain SOX9 mutant. Whereas formation of monomeric mutant SOX9-DNA complex increased linearly with increasing SOX9 concentrations, formation of a wild-type SOX9-DNA dimeric complex increased more slowly suggesting a more sigmoidal-type progression. Stability of SOX9-DNA complexes, however, was unaffected by the dimerization mutation. Both wild-type and mutant SOX9 activated transcription of a naked Col2a1 DNA template. However, after nucleosomal assembly, only wild-type and not the mutant was able to remodel chromatin and activate transcription of this template. Using a cell line, in which the Col2a1 vector was stably integrated, no differences were seen in the interactions of wild-type and mutant SOX9 with the chromatin of the Col2a1 vector using ChIP. However, the mutant was unable to activate transcription in agreement with in vitro results. We hypothesize that the SOX9 dimerization domain is necessary to remodel the Col2a1 chromatin in order to allow transcription to take place. These results further clarify the mechanism that accounts for CD in patients harboring SOX9 dimerization domain mutations.

Indexed as

Chromatin Assembly and DisassemblyTranscriptional ActivationAnimalsCell LineChondrocytesChromatinCollagen Type IIDimerizationDNAEnhancer Elements, GeneticHumansMutationProtein Structure, TertiaryRecombinant ProteinsSOX9 Transcription FactorChromatinCollagen Type IIDNARecombinant ProteinsSOX9 Transcription Factor

Identifiers

PMID20484372
PMCPMC2952863
OpenAlexW2164202117

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.