Evidence map›Paper›PMID 20479471›Full record

ArticleThe Journal of general virology2010

Sequential mutations associated with adaptation of human cytomegalovirus to growth in cell culture.

Derrick J Dargan, Elaine Douglas, Charles Cunningham, Fiona Jamieson, Richard J Stanton, Katarina Baluchova, Brian P McSharry, Peter Tomasec, Vincent C Emery, Elena Percivalle and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of general virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers.

0numbers the graph read from it
0cells of the map it votes in
147citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

147 citing papers in PubMed, 205 citations in OpenAlex.

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  11. Review
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  14. The Pentamer glycoprotein complex inhibits viral Immediate Early transcription during Human Cytomegalovirus infections.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  16. Review
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  19. Article
  20. Article

87 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Derrick J DarganMRC Virology Unit, Institute of Virology, University of Glasgow, Church Street, Glasgow G11 5JR, UK. d.dargan@mrcvu.gla.ac.uk
Elaine Douglas
Charles Cunningham
Fiona Jamieson
Richard J Stanton
Katarina Baluchova
Brian P McSharry
Peter Tomasec
Vincent C Emery
Elena Percivalle
Antonella Sarasini
Giuseppe Gerna
Gavin W G Wilkinson
Andrew J Davison
University of Glasgow · GBCardiff University · GBIstituti di Ricovero e Cura a Carattere Scientifico · ITTenovus Cancer Care · GBPoliclinico San Matteo Fondazione · ITUniversity College London · GB

Funding

Medical Research Council G0700142Medical Research Council MC_U130184136Wellcome Trust
6 · The paper itself

Abstract

Mutations that occurred during adaptation of human cytomegalovirus to cell culture were monitored by isolating four strains from clinical samples, passaging them in various cell types and sequencing ten complete virus genomes from the final passages. Mutational dynamics were assessed by targeted sequencing of intermediate passages and the original clinical samples. Gene RL13 and the UL128 locus (UL128L, consisting of genes UL128, UL130 and UL131A) mutated in all strains. Mutations in RL13 occurred in fibroblast, epithelial and endothelial cells, whereas those in UL128L were limited to fibroblasts and detected later than those in RL13. In addition, a region containing genes UL145, UL144, UL142, UL141 and UL140 mutated in three strains. All strains exhibited numerous mutations in other regions of the genome, with a preponderance in parts of the inverted repeats. An investigation was carried out on the kinetic growth yields of viruses derived from selected passages that were predominantly non-mutated in RL13 and UL128L (RL13+UL128L+), or that were largely mutated in RL13 (RL13-UL128L+) or both RL13 and UL128L (RL13-UL128L-). RL13-UL128L- viruses produced greater yields of infectious progeny than RL13-UL128L+ viruses, and RL13-UL128L+ viruses produced greater yields than RL13+UL128L+ viruses. These results suggest strongly that RL13 and UL128L exert at least partially independent suppressive effects on growth in fibroblasts. As all isolates proved genetically unstable in all cell types tested, caution is advised in choosing and monitoring strains for experimental studies of vulnerable functions, particularly those involved in cell tropism, immune evasion or growth temperance.

Indexed as

Adaptation, BiologicalMutationCell LineCytomegalovirusCytomegalovirus InfectionsDNA Mutational AnalysisDNA, ViralEndothelial CellsEpithelial CellsFibroblastsHumansMolecular Sequence DataSequence Analysis, DNASerial PassageViral ProteinsDNA, ViralViral Proteins

Identifiers

PMID20479471
PMCPMC3052722
OpenAlexW2045944192

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.