Evidence map›Paper›PMID 20479270›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Antibody recognition of a unique tumor-specific glycopeptide antigen.

Cory L Brooks, Andrea Schietinger, Svetlana N Borisova, Peter Kufer, Mark Okon, Tomoko Hirama, C Roger Mackenzie, Lai-Xi Wang, Hans Schreiber, Stephen V Evans

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 86 citations in OpenAlex.

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  15. Synthetic nanobodies as tools to distinguish IgG Fc glycoforms.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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  18. Structure-guided engineering of the affinity and specificity of CARs against Tn-glycopeptides.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 8 institutions in 3 countries.

Cory L BrooksDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC, Canada V8P 3P6.
Andrea Schietinger
Svetlana N Borisova
Peter Kufer
Mark Okon
Tomoko Hirama
C Roger Mackenzie
Lai-Xi Wang
Hans Schreiber
Stephen V Evans
University of Victoria · CAAmgen (United States) · USInstitute for Biological Sciences · CALudwig-Maximilians-Universität München · DENational Research Council Canada · CAUniversity of British Columbia · CAUniversity of Chicago · USUniversity of Maryland, Baltimore · US

Funding

Protein Expression and Peptide CoreP01CA097296 · NCI · UNIVERSITY OF CHICAGO · PI SCHREIBER, HANS · 2003 to 2012
$15.0M
PATHOBIOLOGY OF MYELOMA AND ANTI-IDIOTYPIC IMMUNITYR01CA022677 · NCI · UNIVERSITY OF CHICAGO · PI SCHREIBER, HANS · 1985 to 2024
$6.3M
IMMUNOLOGY OF UNIQUE TUMOR-SPECIFIC ANTIGENSR01CA037156 · NCI · UNIVERSITY OF CHICAGO · PI SCHREIBER, HANS · 1985 to 2017
$3.1M
CIHRNCI NIH HHS P01 CA097296NCI NIH HHS P01 CA97296NCI NIH HHS R01 CA022677NCI NIH HHS R01 CA037156NCI NIH HHS R01 CA22677
6 · The paper itself

Abstract

Aberrant glycosylation and the overexpression of certain carbohydrate moieties is a consistent feature of cancers, and tumor-associated oligosaccharides are actively investigated as targets for immunotherapy. One of the most common aberrations in glycosylation patterns is the presentation of a single O-linked N-acetylgalactosamine on a threonine or serine residue known as the "Tn antigen." Whereas the ubiquitous nature of Tn antigens on cancers has made them a natural focus of vaccine research, such carbohydrate moieties are not always tumor-specific and have been observed on embryonic and nonmalignant adult tissue. Here we report the structural basis of binding of a complex of a monoclonal antibody (237mAb) with a truly tumor-specific glycopeptide containing the Tn antigen. In contrast to glycopeptide-specific antibodies in complex with simple peptides, 237mAb does not recognize a conformational epitope induced in the peptide by sugar substitution. Instead, 237mAb uses a pocket coded by germ-line genes to completely envelope the carbohydrate moiety itself while interacting with the peptide moiety in a shallow groove. Thus, 237mAb achieves its striking tumor specificity, with no observed physiological cross-reactivity to the unglycosylated peptide or the free glycan, by a combination of multiple weak but specific interactions to both the peptide and to the glycan portions of the antigen.

Indexed as

AnimalsAntibodies, MonoclonalAntibody AffinityAntibody SpecificityAntigen-Antibody ComplexAntigens, Tumor-Associated, CarbohydrateCrystallography, X-RayEpitopesGlycopeptidesHumansImmunoglobulin Fab FragmentsIn Vitro TechniquesMiceModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein ConformationAntibodies, MonoclonalAntigen-Antibody ComplexAntigens, Tumor-Associated, CarbohydrateEpitopesGlycopeptidesImmunoglobulin Fab FragmentsTn antigen

Identifiers

PMID20479270
PMCPMC2890472
OpenAlexW2050859638

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.