Evidence map›Paper›PMID 20473506›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2010

Quantitative trait locus and haplotype mapping in closely related inbred strains identifies a locus for open field behavior.

Amy F Eisener-Dorman, Laura Grabowski-Boase, Brian M Steffy, Tim Wiltshire, Lisa M Tarantino

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In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
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  8. Article
  9. Accelerating discovery for complex neurological and behavioral disorders through systems genetics and integrative genomics in the laboratory mouse.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2012
    Review
  10. Forward genetic approaches to understanding complex behaviors.Current topics in behavioral neurosciences · 2012
    Review
  11. The blessings and curses of C57BL/6 substrains in mouse genetic studies.Annals of the New York Academy of Sciences · 2011
    Article
  12. Article
  13. Article
  14. The influence of sex and estrous cycle on QTL for emotionality and ethanol consumption.Mammalian genome : official journal of the International Mammalian Genome Society · 2011
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Amy F Eisener-DormanDepartment of Psychiatry, University of North Carolina, 120 Mason Farm Road, Chapel Hill, NC 27599, USA. adorman@med.unc.edu
Laura Grabowski-Boase
Brian M Steffy
Tim Wiltshire
Lisa M Tarantino

Funding

UNC and PERLEGEN, IncP50GM076468 · NIGMS · JACKSON LABORATORY · PI PETKOV, PETKO M · 2006 to 2015
$31.0M
Fine Mapping Genes for Cocaine Locomotor Response in ENU Mutagenized MiceR01DA022392 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TARANTINO, LISA M · 2007 to 2010
$1.3M
NIDA NIH HHS DA 022392NIDA NIH HHS R01 DA022392NIGMS NIH HHS GM-076468
6 · The paper itself

Abstract

Quantitative trait locus (QTL) mapping in the mouse typically utilizes inbred strains that exhibit significant genetic and phenotypic diversity. The development of dense SNP panels in a large number of inbred strains has eliminated the need to maximize genetic diversity in QTL studies as plenty of SNP markers are now available for almost any combination of strains. We conducted a QTL mapping experiment using both a backcross (N(2)) and an intercross (F(2)) between two genetically similar inbred mouse strains: C57BL/6J (B6) and C57L/J (C57). A set of additive QTLs for activity behaviors was identified on Chrs 1, 9, 13, and 15. We also identified additive QTLs for anxiety-related behaviors on Chrs 7, 9, and 16. A QTL on Chr 11 is sex-specific, and we revealed pairwise interactions between QTLs on Chrs 1 and 13 and Chrs 10 and 18. The Chr 9 activity QTL accounts for the largest amount of phenotypic variance and was not present in our recent analysis of a B6 x C58/J (C58) intercross (Bailey et al. in Genes Brain Behav 7:761-769, 2008). To narrow this QTL interval, we used a dense SNP haplotype map with over 7 million real and imputed SNP markers across 74 inbred mouse strains (Szatkiewicz et al. in Mamm Genome 19(3):199-208, 2008). Evaluation of shared and divergent haplotype blocks among B6, C57, and C58 strains narrowed the Chr 9 QTL interval considerably and highlights the utility of QTL mapping in closely related inbred strains.

Indexed as

Behavior, AnimalHaplotypesQuantitative Trait LociAnimalsChromosome MappingGenetic VariationGenomeGenotypeMiceMice, Inbred C57BLMice, Inbred StrainsMotor ActivityPhenotypePolymorphism, Single Nucleotide

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.