Evidence map›Paper›PMID 20473302›Full record

ArticleNature methods2010

Generating knockout rats by transposon mutagenesis in spermatogonial stem cells.

Zsuzsanna Izsvák, Janine Fröhlich, Ivana Grabundzija, James R Shirley, Heather M Powell, Karen M Chapman, Zoltán Ivics, F Kent Hamra

Abstract read
In one paragraph

Article in Nature methods, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
  2. Review
  3. Rattus norvegicus Spermatogenesis Colony-Forming Assays.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  4. Article
  5. Article
  6. Loss of Piccolo Function in Rats Induces Cerebellar Network Dysfunction and Pontocerebellar Hypoplasia Type 3-like Phenotypes.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2020
    Article
  7. Article
  8. Sprague DawleyMolecular cancer therapeutics · 2018
    Article
  9. Review
  10. TALEN-mediated gene targeting in porcine spermatogonia.Molecular reproduction and development · 2018
    Article
  11. Review
  12. Review
  13. Article
  14. From engineering to editing the rat genome.Mammalian genome : official journal of the International Mammalian Genome Society · 2017
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Zsuzsanna IzsvákMax Delbrück Center for Molecular Medicine, Berlin, Germany. zivics@mdc-berlin.de
Janine Fröhlich
Ivana Grabundzija
James R Shirley
Heather M Powell
Karen M Chapman
Zoltán Ivics
F Kent Hamra
The University of Texas Southwestern Medical Center · USMax Delbrück Center · DEUniversity of Debrecen · HU

Funding

DISCOVERY &FUNCTION OF FERTILIZATION-SPECIFIC MOLECULESR01HD036022 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI HAMRA, F. KENT · 2000 to 2009
$2.3M
Molecular Mechanisms of Spermatogonial DevelopmentR01HD053889 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI HAMRA, F. KENT · 2009 to 2013
$1.6M
Gene Targeting in Rat Spermatogonial Stem CellsR21RR023958 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI HAMRA, F. KENT · 2007 to 2008
$427k
NCRR NIH HHS R21 RR023958NCRR NIH HHS R21RR023958NICHD NIH HHS R01 HD036022NICHD NIH HHS R01HD036022NICHD NIH HHS R01 HD053889
6 · The paper itself

Abstract

Disrupting genes in the rat on a genome-wide scale will allow the investigation of many biological processes linked to human health. Here we used transposon-mediated mutagenesis to knock out genes in rat spermatogonial stem cells. Given the capacity of the testis to support spermatogenesis from thousands of transplanted, genetically manipulated spermatogonia, this approach paves a way for high-throughput functional genomic studies in the laboratory rat.

Indexed as

MutagenesisAnimalsDNA Transposable ElementsGene Knockout TechniquesMaleRatsSpermatogoniaStem CellsDNA Transposable Elements

Identifiers

PMID20473302
PMCPMC2886193
OpenAlexW1974039964

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.