Evidence map›Paper›PMID 20473289›Full record

ArticleNature biotechnology2010

Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.

Dong-Uk Kim, Jacqueline Hayles, Dongsup Kim, Valerie Wood, Han-Oh Park, Misun Won, Hyang-Sook Yoo, Trevor Duhig, Miyoung Nam, Georgia Palmer and 27 more

Erratum issuedAbstract read
In one paragraph

Article in Nature biotechnology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 480 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
480citing papers in PubMed, 1 pooled it
21.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

480 citing papers in PubMed, 1 synthesis or guideline pooled it, 765 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Recurrent reversible mutations atMicrobiology spectrum · 2026
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  5. Review
  6. The power of many: when genetics met yeasts and high-throughput.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
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420 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

37 authors at 10 institutions in 3 countries.

Dong-Uk Kim *Integrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Jacqueline Hayles *Cancer Research UK, The London Research Institute, 44, Lincoln's Inn Fields, LondonWC2A 3PX, UK.
Dongsup Kim *Department of Bio and Brain Engineering, Korea Advanced Institute of Science & Technology (KAIST), Yuseong, Daejeon, Korea.
Valerie Wood *Cancer Research UK, The London Research Institute, 44, Lincoln's Inn Fields, LondonWC2A 3PX, UK.
Han-Oh Park *Bioneer Corporation, Daedeok, Daejeon, Korea.
Misun Won *Integrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Hyang-Sook Yoo *Integrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Trevor DuhigCancer Research UK, The London Research Institute, 44, Lincoln's Inn Fields, LondonWC2A 3PX, UK.
Miyoung NamIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Georgia PalmerCancer Research UK, The London Research Institute, 44, Lincoln's Inn Fields, LondonWC2A 3PX, UK.
Sangjo HanDepartment of Bio and Brain Engineering, Korea Advanced Institute of Science & Technology (KAIST), Yuseong, Daejeon, Korea.
Linda JefferyCancer Research UK, The London Research Institute, 44, Lincoln's Inn Fields, LondonWC2A 3PX, UK.
Seung-Tae BaekIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Hyemi LeeIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Young Sam ShimIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Minho LeeDepartment of Bio and Brain Engineering, Korea Advanced Institute of Science & Technology (KAIST), Yuseong, Daejeon, Korea.
Lila KimIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Kyung-Sun HeoIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Eun Joo NohIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Ah-Reum LeeIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Young-Joo JangIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Kyung-Sook ChungIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Shin-Jung ChoiIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Jo-Young ParkIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Youngwoo ParkIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Hwan Mook KimBioevaluation Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Ochang, Chungcheongbuk-do, Korea.
Song-Kyu ParkBioevaluation Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Ochang, Chungcheongbuk-do, Korea.
Hae-Joon ParkBioneer Corporation, Daedeok, Daejeon, Korea.
Eun-Jung KangBioneer Corporation, Daedeok, Daejeon, Korea.
Hyong Bai KimDepartment of Bioinformatics & Biotechnology, Korea University, Jochiwon, Chungnam, Korea.
Hyun-Sam KangSchool of Biological Sciences, Seoul National University, Seoul, Korea.
Hee-Moon ParkDepartment of Microbiology, Chungnam National University, Yuseong, Daejeon, Korea.
Kyunghoon KimDivision of Life Sciences, Kangwon National University, Chuncheon, Kangwon-do, Korea.
Kiwon SongDepartment of Biochemistry, Yonsei University, Seoul, Korea.
Kyung Bin SongDepartment of Food and Nutrition, Chungnam National University, Yuseong, Daejeon, Korea.
Paul NurseCancer Research UK, The London Research Institute, 44, Lincoln's Inn Fields, LondonWC2A 3PX, UK.
Kwang-Lae HoeIntegrative Omics Research Centre, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Yuseong, Daejeon, Korea.
Korea Research Institute of Bioscience and Biotechnology · KRCancer Research UK · GBKorea Advanced Institute of Science and Technology · KRChungnam National University · KRDankook University · KRKangwon National University · KRKorea University · KRRockefeller University · USSeoul National University · KRYonsei University · KR

Funding

Cancer Research UKWellcome Trust 079643Wellcome Trust 093917
6 · The paper itself

Abstract

We report the construction and analysis of 4,836 heterozygous diploid deletion mutants covering 98.4% of the fission yeast genome providing a tool for studying eukaryotic biology. Comprehensive gene dispensability comparisons with budding yeast--the only other eukaryote for which a comprehensive knockout library exists--revealed that 83% of single-copy orthologs in the two yeasts had conserved dispensability. Gene dispensability differed for certain pathways between the two yeasts, including mitochondrial translation and cell cycle checkpoint control. We show that fission yeast has more essential genes than budding yeast and that essential genes are more likely than nonessential genes to be present in a single copy, to be broadly conserved and to contain introns. Growth fitness analyses determined sets of haploinsufficient and haploproficient genes for fission yeast, and comparisons with budding yeast identified specific ribosomal proteins and RNA polymerase subunits, which may act more generally to regulate eukaryotic cell growth.

Indexed as

Gene DeletionDiploidyGenes, EssentialGenes, FungalGenome, FungalHaploidySaccharomyces cerevisiaeSchizosaccharomycesSequence Homology, Nucleic AcidSpecies Specificity

Identifiers

PMID20473289
PMCPMC3962850
OpenAlexW2052948442

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.