Evidence map›Paper›PMID 20472798›Full record

ArticleJournal of bacteriology2010

RpoS, the stress response sigma factor, plays a dual role in the regulation of Escherichia coli's error-prone DNA polymerase IV.

Kimberly A M Storvik, Patricia L Foster

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

  1. On the role of dcm and vsr in Escherichia coli adaptive mutation.Molecular genetics and genomics : MGG · 2025
    Article
  2. Core Perturbomes ofPathogens (Basel, Switzerland) · 2025
    Article
  3. Review
  4. Article
  5. σFrontiers in microbiology · 2021
    Article
  6. Review
  7. Degeneration of industrial bacteria caused by genetic instability.World journal of microbiology & biotechnology · 2020
    Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Translesion DNA Synthesis.EcoSal Plus · 2012
    Article
  18. Review
  19. Article
  20. Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kimberly A M StorvikDepartment of Biology, Indiana University, 1001 East Third Street, Bloomington, IN 47405, USA.
Patricia L Foster
Indiana University Bloomington · US

Funding

Regulation of an Error-Prone PolymeraseR01GM065175 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI FOSTER, PATRICIA LORRAINE · 2002 to 2011
$2.0M
NIGMS NIH HHS GM065175NIGMS NIH HHS R01 GM065175
6 · The paper itself

Abstract

RpoS, Escherichia coli's general stress response sigma factor, regulates error-prone DNA polymerase IV (Pol IV) (encoded by the dinB gene). Pol IV is induced in stationary-phase cells, and thereafter, levels of the protein remain elevated for several days of continuous incubation. This induction and persistence in stationary-phase cells are dependent on RpoS. Data presented here show that this regulation is direct via the RpoS-directed transcription of the dinB gene. However, a loss of RpoS also results in a decrease in Pol IV-dependent mutation when Pol IV is overexpressed from an RpoS-independent promoter in exponentially growing cells. The loss of RpoS also increases cell sensitivity to 4-nitroquinoline-1-oxide, indicating that RpoS affects the ability of Pol IV to bypass DNA lesions. Thus, in addition to directly driving the transcription of the dinB gene in stationary-phase cells, RpoS regulates the activity of Pol IV in exponentially growing cells via a second, indirect pathway.

Indexed as

Bacterial ProteinsCell DivisionEscherichia coliEscherichia coli ProteinsGene DeletionGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicSigma FactorTranscription, GeneticBacterial ProteinsDinB protein, E coliEscherichia coli ProteinsSigma Factorsigma factor KatF protein, Bacteria

Identifiers

PMID20472798
PMCPMC2897332
OpenAlexW2061551098

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.