Evidence map›Paper›PMID 20472738›Full record

ArticleApplied and environmental microbiology2010

{gamma}-Glutamylmethylamide is an essential intermediate in the metabolism of methylamine by Methylocella silvestris.

Yin Chen, Julie Scanlan, Lijiang Song, Andrew Crombie, M Tanvir Rahman, Hendrik Schäfer, J Colin Murrell

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Characterization of the TrimethylamineFrontiers in microbiology · 2022
    Article
  5. Aerobic bacterial methane synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Review
  7. Pathway engineering ofMetabolic engineering communications · 2020
    Article
  8. Review
  9. FermentativeMicroorganisms · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Fermentative Production ofFrontiers in bioengineering and biotechnology · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yin ChenDepartment of Biological Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.
Julie Scanlan
Lijiang Song
Andrew Crombie
M Tanvir Rahman
Hendrik Schäfer
J Colin Murrell
University of Warwick · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methylocella silvestris BL2, a facultative methane utilizer, can grow on monomethylamine (MMA) as a sole carbon and nitrogen source. No activity of MMA dehydrogenase was detectable. Instead, this bacterium utilizes a methylated amino acid pathway (gamma-glutamylmethylamide [GMA] and N-methylglutamate [NMG]) for MMA metabolism. The activities of the two key enzymes in this pathway, GMA synthetase and NMG dehydrogenase, were found when the bacterium was grown on MMA. GMA was detected by high-performance liquid chromatography-mass spectrometry only when the bacterium was grown on MMA but not when it was grown on methanol. Proteomic analysis of soluble and membrane fractions of the proteome from MMA- and methanol-grown cultures revealed that an eight-gene cluster (Msil2632 to Msil2639) was induced by MMA and cotranscribed as an operon, as shown by reverse transcription-PCR. GMA-dissimilating enzyme activity was also detected when it was grown on MMA. Formaldehyde and ammonium production from GMA was dependent on glutamate but not on alpha-ketoglutarate. Marker exchange mutagenesis of a putative GMAS gene homologue (gmas, Msil2635) within this eight-gene cluster, with a kanamycin gene cassette, abolished growth of M. silvestris on MMA as either a sole carbon or a sole nitrogen source. Overall, our results suggest that gmas is essential in MMA metabolism by M. silvestris.

Indexed as

BeijerinckiaceaeChromatography, High Pressure LiquidCulture MediaGene Expression Regulation, BacterialGlutamatesLigasesMass SpectrometryMethylaminesMultigene FamilyOxidoreductasesProteomicsReverse Transcriptase Polymerase Chain ReactionCulture Mediagamma-glutamylmethylamideGlutamatesLigasesmethylamineMethylaminesN-methylglutamateOxidoreductases

Identifiers

PMID20472738
PMCPMC2897447
OpenAlexW2129769626

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.