ArticleBMC genomics2010
Touring Ensembl: a practical guide to genome browsing.
Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
19 citing papers in PubMed, 39 citations in OpenAlex.
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- CrossMap: a versatile tool for coordinate conversion between genome assemblies.Bioinformatics (Oxford, England) · 2014Article
- A survey of tools for variant analysis of next-generation genome sequencing data.Briefings in bioinformatics · 2014Article
- The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines.Frontiers in genetics · 2014Article
- Browsing (Epi)genomes: a guide to data resources and epigenome browsers for stem cell researchers.Cell stem cell · 2013Review
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- Discerning non-disjunction in Down syndrome patients by means of GluK1-(AGAT)(n) and D21S2055-(GATA)(n) microsatellites on chromosome 21.Indian journal of human genetics · 2012Article
- Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens.BMC genomics · 2012Article
- Transient knockdown and overexpression reveal a developmental role for the zebrafish enosf1b gene.Cell & bioscience · 2011Article
- Exploration of plant genomes in the FLAGdb++ environment.Plant methods · 2011Article
- SigCS base: an integrated genetic information resource for human cerebral stroke.BMC systems biology · 2011Article
- Ensembl 2011.Nucleic acids research · 2011Article
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Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The number of databases in molecular biological fields has rapidly increased to provide a large-scale resource. Though valuable information is available, data can be difficult to access, compare and integrate due to different formats and presentations of web interfaces. This paper offers a practical guide to the integration of gene, comparative genomic, and functional genomics data using the Ensembl website at http://www.ensembl.org.The Ensembl genome browser and underlying databases focus on chordate organisms. More species such as plants and microorganisms can be investigated using our sister browser at http://www.ensemblgenomes.org.In this study, four examples are used that sample many pages and features of the Ensembl browser. We focus on comparative studies across over 50 mostly chordate organisms, variations linked to disease, functional genomics, and access of external information housed in databases outside the Ensembl project. Researchers will learn how to go beyond simply exporting one gene sequence, and explore how a genome browser can integrate data from various sources and databases to build a full and comprehensive biological picture.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.