Evidence map›Paper›PMID 20457922›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Sugar binding induces the same global conformational change in purified LacY as in the native bacterial membrane.

Yiling Nie, H Ronald Kaback

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 34 citations in OpenAlex.

  1. Solvent accessibility changes in a NaThe Journal of biological chemistry · 2020
    Article
  2. The proton electrochemical gradient induces a kinetic asymmetry in the symport cycle of LacY.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  3. It takes two to tango: The dance of the permease.The Journal of general physiology · 2019
    Review
  4. Article
  5. Crystal structure of a LacY-nanobody complex in a periplasmic-open conformation.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  6. Article
  7. A chemiosmotic mechanism of symport.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  8. Outward-facing conformers of LacY stabilized by nanobodies.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  9. Real-time conformational changes in LacY.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  10. Article
  11. Structure of sugar-bound LacY.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  12. Article
  13. Trp replacements for tightly interacting Gly-Gly pairs in LacY stabilize an outward-facing conformation.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  14. Proton-coupled dynamics in lactose permease.Structure (London, England : 1993) · 2012
    Article
  15. Dynamics of the L-fucose/H+ symporter revealed by fluorescence spectroscopy.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  16. Role of the irreplaceable residues in the LacY alternating access mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  17. Evidence for an intermediate conformational state of LacY.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  18. Article
  19. Opening the periplasmic cavity in lactose permease is the limiting step for sugar binding.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Yiling NieDepartment of Physiology, Department of Microbiology, Immunology & Molecular Genetics, and Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA.
H Ronald Kaback
Czech Academy of Sciences, Institute of Physiology · CZ

Funding

Yeast ExpressionP50GM073210 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2004 to 2013
$21.5M
SPECIALIZED CENTER FOR THE PROTEIN STRUCTURE INITIATIVEU54GM074929 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STAHLBERG, HENNING · 2005 to 2009
$16.6M
NEW APPROACHES TO MEMBRANE PROTEIN STRUCTURESR01DK051131 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KABACK, HOWARD RONALD · 1996 to 2014
$5.2M
Structural Basis for Mechanism of Secondary TransportersR01DK069463 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KABACK, HOWARD RONALD · 2005 to 2013
$3.7M
Structural Basis for Mechanism of Secondary TransportersR56DK069463 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KABACK, HOWARD RONALD · 2009 to 2009
$500k
Dynamics of the Lactose Permease of Escherichia ColiR56DK051131 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KABACK, HOWARD RONALD · 2015 to 2015
$154k
NIDDK NIH HHS DK051131NIDDK NIH HHS DK069463NIDDK NIH HHS R01 DK051131NIDDK NIH HHS R01 DK069463NIDDK NIH HHS R56 DK051131NIDDK NIH HHS R56 DK069463NIGMS NIH HHS GM073210NIGMS NIH HHS GM074929NIGMS NIH HHS P50 GM073210NIGMS NIH HHS U54 GM074929
6 · The paper itself

Abstract

Many independent lines of evidence indicate that the lactose permease of Escherichia coli (LacY) is highly dynamic and that sugar binding causes closing of a large inward-facing cavity with opening of a wide outward-facing hydrophilic cavity. Therefore, lactose/H(+) symport catalyzed by LacY very likely involves a global conformational change that allows alternating access of single sugar- and H(+)-binding sites to either side of the membrane (the alternating access model). The x-ray crystal structures of LacY, as well as the majority of spectroscopic studies, use purified protein in detergent micelles. By using site-directed alkylation, we now demonstrate that sugar binding induces virtually the same global conformational change in LacY whether the protein is in the native bacterial membrane or is solubilized and purified in detergent. The results also indicate that the x-ray crystal structure reflects the structure of wild-type LacY in the native membrane in the absence of sugar.

Indexed as

Carbohydrate MetabolismCarbohydratesCell MembraneCrystallography, X-RayEscherichia coliEscherichia coli ProteinsMicellesModels, MolecularMonosaccharide Transport ProteinsMutationProtein BindingProtein Structure, TertiarySolubilitySymportersCarbohydratesEscherichia coli ProteinsLacY protein, E coliMicellesMonosaccharide Transport ProteinsSymporters

Identifiers

PMID20457922
PMCPMC2906848
OpenAlexW2128118982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.