Evidence map›Paper›PMID 20457759›Full record

ArticleThe Journal of experimental medicine2010

Peptide-MHC heterodimers show that thymic positive selection requires a more restricted set of self-peptides than negative selection.

Jeremy Juang, Peter J R Ebert, Dan Feng, K Christopher Garcia, Michelle Krogsgaard, Mark M Davis

Abstract read
In one paragraph

Article in The Journal of experimental medicine, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Review
  2. Article
  3. Mechanical force matters in early T cell activation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. ApoB-Specific CD4Cells · 2021
    Review
  10. Article
  11. Review
  12. CD5 dynamically calibrates basal NF-κB signaling in T cells during thymic development and peripheral activation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Article
  14. Article
  15. Stress-testing the relationship between T cell receptor/peptide-MHC affinity and cross-reactivity using peptide velcro.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  16. Article
  17. TCR Signaling: Mechanisms of Initiation and Propagation.Trends in biochemical sciences · 2018
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jeremy JuangThe Department of Microbiology and Immunology, Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305, USA.
Peter J R Ebert
Dan Feng
K Christopher Garcia
Michelle Krogsgaard
Mark M Davis

Funding

T CELL RECEPTOR STRUCTURE AND EXPRESSIONR01AI022511 · NIAID · STANFORD UNIVERSITY · PI DAVIS, MARK MORRIS · 1985 to 2014
$3.3M
Visualizing ligand-induced signal propagation in the TCR-signaling complexR01GM085586 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KROGSGAARD, MICHELLE · 2008 to 2014
$1.5M
Biophysical analysis of T-cell discrimination among classes of self-ligandsU01CA137070 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KROGSGAARD, MICHELLE · 2009 to 2010
$701k
Howard Hughes Medical InstituteNCI NIH HHS U01 CA137070NIAID NIH HHS R01 AI022511NIGMS NIH HHS R01 GM085586PHS HHS R01 AIO22511
6 · The paper itself

Abstract

T cell selection and maturation in the thymus depends on the interactions between T cell receptors (TCRs) and different self-peptide-major histocompatibility complex (pMHC) molecules. We show that the affinity of the OT-I TCR for its endogenous positively selecting ligands, Catnb-H-2Kb and Cappa1-H-2Kb, is significantly lower than for previously reported positively selecting altered peptide ligands. To understand how these extremely weak endogenous ligands produce signals in maturing thymocytes, we generated soluble monomeric and dimeric peptide-H-2Kb ligands. Soluble monomeric ovalbumin (OVA)-Kb molecules elicited no detectable signaling in OT-I thymocytes, whereas heterodimers of OVA-Kb paired with positively selecting or nonselecting endogenous peptides, but not an engineered null peptide, induced deletion. In contrast, dimer-induced positive selection was much more sensitive to the identity of the partner peptide. Catnb-Kb-Catnb-Kb homodimers, but not heterodimers of Catnb-Kb paired with a nonselecting peptide-Kb, induced positive selection, even though both ligands bind the OT-I TCR with detectable affinity. Thus, both positive and negative selection can be driven by dimeric but not monomeric ligands. In addition, positive selection has much more stringent requirements for the partner self-pMHC.

Indexed as

Amino Acid SequenceAnimalsCalcium SignalingFetusHistocompatibility AntigensLigandsMiceMice, Inbred C57BLOrgan Culture TechniquesPeptidesProtein EngineeringProtein MultimerizationReceptors, Antigen, T-CellSignal TransductionThymus GlandHistocompatibility AntigensLigandsPeptidesReceptors, Antigen, T-Cell

Identifiers

PMID20457759
PMCPMC2882826

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.