Evidence map›Paper›PMID 20454835›Full record

ArticlePlant molecular biology2010

Zinc finger nuclease-mediated transgene deletion.

Joseph F Petolino, Andrew Worden, Krisi Curlee, James Connell, Tonya L Strange Moynahan, Cory Larsen, Sean Russell

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 127 citations in OpenAlex.

  1. Review
  2. Recent Advances in Tomato Gene Editing.International journal of molecular sciences · 2024
    Review
  3. Review
  4. Review
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  7. Article
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  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Gene stacking by recombinases.Plant biotechnology journal · 2016
    Review
  20. Designed nucleases for targeted genome editing.Plant biotechnology journal · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Joseph F PetolinoDow AgroSciences, 9330 Zionsville Rd., Indianapolis, IN 46268, USA. jfpetolino@dow.com
Andrew Worden
Krisi Curlee
James Connell
Tonya L Strange Moynahan
Cory Larsen
Sean Russell

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A transgene, flanked by zinc finger nuclease (ZFN) cleavage sites, was deleted from a stably transformed plant by crossing it with a second plant expressing a corresponding ZFN gene. A target construct, containing a GUS reporter gene flanked by ZFN cleavage sites, a GFP reporter gene and a PAT selectable marker gene, was transformed into tobacco. Basta-resistant plants were regenerated and screened for GUS and GFP expression. A second construct, containing a ZFN gene driven by the constitutive CsVMV promoter and an HPT selectable marker gene, was also transformed into tobacco. Selected T(0) plants were grown to maturity and allowed to self-pollinate. Homozygous target plants, which expressed GUS and GFP, were crossed with homozygous ZFN plants, which expressed the ZFN gene. Numerous GUS-negative plants were observed among the hybrids with one particular cross displaying approximately 35% GUS-negative plants. Evidence for complete deletion of a 4.3 kb sequence comprising the GUS gene was obtained and sequence confirmed. Co-segregation in F(2) progenies of 'truncated' and 'intact' target sequences with expected reporter gene phenotypes were observed. Since ZFNs can be designed to bind and cleave a wide range of DNA sequences, these results constitute a general strategy for creating targeted gene deletions.

Indexed as

Zinc FingersBase SequenceBlotting, SouthernCrosses, GeneticEndonucleasesGlucuronidaseGreen Fluorescent ProteinsMolecular Sequence DataNicotianaPlants, Genetically ModifiedSequence DeletionSequence Homology, Nucleic AcidTransgenesEndonucleasesGlucuronidaseGreen Fluorescent Proteins

Identifiers

PMID20454835
OpenAlexW2000685562

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.