Evidence map›Paper›PMID 20453859›Full record

ArticleNature structural & molecular biology2010

p53 activates transcription by directing structural shifts in Mediator.

Krista D Meyer, Shih-Chieh Lin, Carrie Bernecky, Yuefeng Gao, Dylan J Taatjes

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 140 citations in OpenAlex.

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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Krista D MeyerDepartment of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado, USA.
Shih-Chieh Lin
Carrie Bernecky
Yuefeng Gao
Dylan J Taatjes
University of Colorado Boulder · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Predoctoral Training Molecular BiophysicsT32GM065103 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI FALKE, JOSEPH J · 2002 to 2021
$4.3M
Mechanistic Studies of Mediator and the p53 Tumor SuppressorR01CA127364 · NCI · UNIVERSITY OF COLORADO · PI TAATJES, DYLAN J · 2007 to 2011
$1.1M
NCI NIH HHS P30 CA046934NCI NIH HHS R01 CA127364NIGMS NIH HHS T32 GM065103
6 · The paper itself

Abstract

It is not well understood how the human Mediator complex, transcription factor IIH and RNA polymerase II (Pol II) work together with activators to initiate transcription. Activator binding alters Mediator structure, yet the functional consequences of such structural shifts remain unknown. The p53 C terminus and its activation domain interact with different Mediator subunits, and we find that each interaction differentially affects Mediator structure; strikingly, distinct p53-Mediator structures differentially affect Pol II activity. Only the p53 activation domain induces the formation of a large pocket domain at the Mediator-Pol II interaction site, and this correlates with activation of stalled Pol II to a productively elongating state. Moreover, we define a Mediator requirement for TFIIH-dependent Pol II C-terminal domain phosphorylation and identify substantial differences in Pol II C-terminal domain processing that correspond to distinct p53-Mediator structural states. Our results define a fundamental mechanism by which p53 activates transcription and suggest that Mediator structural shifts trigger activation of stalled Pol II complexes.

Indexed as

Transcriptional ActivationCryoelectron MicroscopyGenes, p53HeLa CellsHumansIn Vitro TechniquesMediator ComplexModels, BiologicalModels, MolecularMutagenesis, Site-DirectedPromoter Regions, GeneticProtein Interaction Domains and MotifsProtein Processing, Post-TranslationalRecombinant ProteinsRNA Polymerase IITranscription Factor TFIIHMediator ComplexRecombinant ProteinsRNA Polymerase IITP53 protein, humanTranscription Factor TFIIHTumor Suppressor Protein p53

Identifiers

PMID20453859
PMCPMC2932482
OpenAlexW2061565653

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.