Evidence map›Paper›PMID 20453842›Full record

SynthesisNature genetics2010

Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.

Eli A Stahl, Soumya Raychaudhuri, Elaine F Remmers, Gang Xie, Stephen Eyre, Brian P Thomson, Yonghong Li, Fina A S Kurreeman, Alexandra Zhernakova, Anne Hinks and 60 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Nature genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 707 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
707citing papers in PubMed, 7 pooled it
85.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

707 citing papers in PubMed, 7 syntheses or guidelines pooled it, 1,270 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Genome-wide meta-analysis reveals shared newAnnals of the rheumatic diseases · 2019
    Pooled it
  7. Pooled it
  8. Article
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  10. Article
  11. Review
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  14. Article
  15. Article
  16. Primary biliary cirrhosis and rheumatoid arthritis: a comprehensive study combining genetics and transcriptomics.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Article
  17. Review
  18. Article
  19. Review
  20. STAT4 gene polymorphism promotes progression of rheumatoid arthritis.Journal, genetic engineering & biotechnology · 2025
    Article

647 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

70 authors at 20 institutions in 6 countries.

Eli A StahlDivision of Rheumatology, Immunology and Allergy, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Soumya Raychaudhuri
Elaine F Remmers
Gang Xie
Stephen Eyre
Brian P Thomson
Yonghong Li
Fina A S Kurreeman
Alexandra Zhernakova
Anne Hinks
Candace Guiducci
Robert Chen
Lars Alfredsson
Christopher I Amos
Kristin G Ardlie
BIRAC Consortium
Anne Barton
John Bowes
Elisabeth Brouwer
Noel P Burtt
Joseph J Catanese
Jonathan Coblyn
Marieke J H Coenen
Karen H Costenbader
Lindsey A Criswell
J Bart A Crusius
Jing Cui
Paul I W de Bakker
Philip L De Jager
Bo Ding
Paul Emery
Edward Flynn
Pille Harrison
Lynne J Hocking
Tom W J Huizinga
Daniel L Kastner
Xiayi Ke
Annette T Lee
Xiangdong Liu
Paul Martin
Ann W Morgan
Leonid Padyukov
Marcel D Posthumus
Timothy R D J Radstake
David M Reid
Mark Seielstad
Michael F Seldin
Nancy A Shadick
Sophia Steer
Paul P Tak
Wendy Thomson
Annette H M van der Helm-van Mil
Irene E van der Horst-Bruinsma
C Ellen van der Schoot
Piet L C M van Riel
Michael E Weinblatt
Anthony G Wilson
Gert Jan Wolbink
B Paul Wordsworth
YEAR Consortium
Cisca Wijmenga
Elizabeth W Karlson
Rene E M Toes
Niek de Vries
Ann B Begovich
Jane Worthington
Katherine A Siminovitch
Peter K Gregersen
Lars Klareskog
Robert M Plenge
Brigham and Women's Hospital · USUniversity of Manchester · GBBroad Institute · USLeiden University Medical Center · NLAcademic Medical Center · NLKarolinska Institutet · SEMount Sinai Hospital · CANational Institutes of Health · USNIHR Oxford Musculoskeletal Biomedical Research Centre · GBRadboud University Medical Center · NLUniversity Medical Center Groningen · NLUniversity of Aberdeen · GBUniversity of Groningen · NLVrije Universiteit Amsterdam · NLFeinstein Institute for Medical Research · USGenome Institute of Singapore · SGKarolinska University Hospital · SEKing's College Hospital NHS Foundation Trust · GBNational Institute for Health Research · GBNIHR Leeds Musculoskeletal Biomedical Research Unit · GB

Funding

Statistical MethodsP01CA087969 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ROSNER, BERNARD A · 2000 to 2019
$77.8M
Risk Factors for Breast Cancer in Younger NursesR01CA050385 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI ELIASSEN, A. HEATHER, WILLETT, WALTER C. · 1989 to 2019
$32.3M
ZD1839 FOR MALIGNANT ASTROCYTOMA OR GLIOBLASTOMA AND MENINGIOMAM01RR000079 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$26.0M
Trial of risk mangement for prevention of accelerated atherosclerosis in SLEP60AR047782 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI LOSINA, ELENA · 2001 to 2016
$18.8M
AN NCRR CENTER FOR HIGH THROUGHPUT SNP GENOTYPING AND ANALYSIS: GAIN NETWORKU54RR020278 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2004 to 2008
$14.4M
Premonopausal Hormone Levels and Risk of Breast CancerR01CA067262 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI HANKINSON, SUSAN E · 2002 to 2011
$11.9M
BIOCHEMICAL MARKERS IN THE NURSES'HEALTH STUDY COHORTR01CA049449 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI HANKINSON, SUSAN E · 1989 to 2008
$11.3M
Novel Biomarkers and Prediction Models for Rheumatoid ArthritisR01AR049880 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI COSTENBADER, KAREN H, KARLSON, ELIZABETH W · 2003 to 2018
$8.7M
NARAC The Genetics of Rheumatoid ArthritisR01AR044422 · NIAMS · NORTH SHORE UNIVERSITY HOSPITAL · PI GREGERSEN, PETER K. · 1997 to 2011
$6.0M
BIOCHEMICAL MARKERS IN THE NURSES HEALTH STUDY COHORTU01CA049449 · NCI · UNIVERSITY OF MASSACHUSETTS AMHERST · PI HANKINSON, SUSAN E · 1995 to 2013
$5.4M
A Genome-wide Association Study for Early-Onset Myocardial InfarctionR01HL087676 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI ALTSHULER, DAVID · 2007 to 2009
$4.7M
Dissecting the HLA contribution to Rheumatoid ArthritisR01AI065841 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRISWELL, LINDSEY ANN · 2006 to 2010
$3.2M
Arthritis Research UK 18475Arthritis Research UK 19356CIHR IIN-84042CIHR MOP79321Intramural NIH HHSNCI NIH HHS CA49449NCI NIH HHS CA50385NCI NIH HHS CA67262NCI NIH HHS P01 CA087969NCI NIH HHS P01 CA87969NCI NIH HHS R01 CA049449NCI NIH HHS R01 CA050385NCI NIH HHS R01 CA067262NCI NIH HHS U01 CA049449NCI NIH HHS U01 CA067262NCRR NIH HHS 5-M01-RR-00079NCRR NIH HHS M01 RR000079NCRR NIH HHS U54 RR020278NHLBI NIH HHS R01 HL087676NHLBI NIH HHS R01HL087676NIAID NIH HHS R01 AI065841NIAMS NIH HHS 1K08AR055688-01A1NIAMS NIH HHS AR049880-06NIAMS NIH HHS AR47782NIAMS NIH HHS K08 AR055688NIAMS NIH HHS N01-AR-2-2263NIAMS NIH HHS P60 AR047782NIAMS NIH HHS R01 AR044422NIAMS NIH HHS R01 AR049880NIAMS NIH HHS R01 AR056768NIAMS NIH HHS R01-AR056768NIAMS NIH HHS R01 AR057108NIAMS NIH HHS R01-AR057108NIAMS NIH HHS R01 AR059648NIAMS NIH HHS R01 AR44422
6 · The paper itself

Abstract

To identify new genetic risk factors for rheumatoid arthritis, we conducted a genome-wide association study meta-analysis of 5,539 autoantibody-positive individuals with rheumatoid arthritis (cases) and 20,169 controls of European descent, followed by replication in an independent set of 6,768 rheumatoid arthritis cases and 8,806 controls. Of 34 SNPs selected for replication, 7 new rheumatoid arthritis risk alleles were identified at genome-wide significance (P < 5 x 10(-8)) in an analysis of all 41,282 samples. The associated SNPs are near genes of known immune function, including IL6ST, SPRED2, RBPJ, CCR6, IRF5 and PXK. We also refined associations at two established rheumatoid arthritis risk loci (IL2RA and CCL21) and confirmed the association at AFF3. These new associations bring the total number of confirmed rheumatoid arthritis risk loci to 31 among individuals of European ancestry. An additional 11 SNPs replicated at P < 0.05, many of which are validated autoimmune risk alleles, suggesting that most represent genuine rheumatoid arthritis risk alleles.

Indexed as

Genetic LociGenetic Predisposition to DiseaseArthritis, RheumatoidAutoantibodiesGenome-Wide Association StudyHumansPolymorphism, Single NucleotideRisk FactorsAutoantibodies

Identifiers

PMID20453842
PMCPMC4243840
OpenAlexW2115783720

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.