Evidence map›Paper›PMID 20452361›Full record

ArticleJournal of molecular biology2010

Binding of the MLL PHD3 finger to histone H3K4me3 is required for MLL-dependent gene transcription.

Pei-Yun Chang, Robert A Hom, Catherine A Musselman, Li Zhu, Alex Kuo, Or Gozani, Tatiana G Kutateladze, Michael L Cleary

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 108 citations in OpenAlex.

  1. Article
  2. Review
  3. Only InfantInternational journal of molecular sciences · 2024
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Non-histone binding functions of PHD fingers.Trends in biochemical sciences · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Understanding the interplay between CpG island-associated gene promoters and H3K4 methylation.Biochimica et biophysica acta. Gene regulatory mechanisms · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Pei-Yun ChangDepartment of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Robert A Hom
Catherine A Musselman
Li Zhu
Alex Kuo
Or Gozani
Tatiana G Kutateladze
Michael L Cleary
Stanford University · USUniversity of Colorado Denver · US

Funding

Molecular Targeting of MLL and Associated FactorsR01CA116606 · NCI · STANFORD UNIVERSITY · PI CLEARY, MICHAEL L · 2005 to 2020
$4.7M
Function of PHD Domain Proteins in Chromatin RegulationR01GM079641 · NIGMS · STANFORD UNIVERSITY · PI GOZANI, OR P. · 2007 to 2020
$4.5M
PATHOLOGY AND BIOLOGY OF LEUKEMIA ONCOGENESR01CA055029 · NCI · STANFORD UNIVERSITY · PI CLEARY, MICHAEL L · 1991 to 2008
$3.1M
Structural basis of signaling by ING2 PHDR01CA113472 · NCI · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2006 to 2010
$987k
NCI NIH HHS CA113472NCI NIH HHS CA116606NCI NIH HHS CA55029NCI NIH HHS R01 CA055029NCI NIH HHS R01 CA113472NCI NIH HHS R01 CA116606NIGMS NIH HHS GM079641NIGMS NIH HHS R01 GM079641
6 · The paper itself

Abstract

The MLL (mixed-lineage leukemia) proto-oncogene encodes a histone methyltransferase that creates the methylated histone H3K4 epigenetic marks, commonly associated with actively transcribed genes. In addition to its canonical histone methyltransferase SET domain, the MLL protein contains three plant homeodomain (PHD) fingers that are well conserved between species but whose potential roles and requirements for MLL function are unknown. Here, we demonstrate that the third PHD domain of MLL (PHD3) binds histone H3 trimethylated at lysine 4 (H3K4me3) with high affinity and specificity and H3K4me2 with 8-fold lower affinity. Biochemical and structural analyses using NMR and fluorescence spectroscopy identified key amino acids essential for the interaction with H3K4me3. Site-directed mutations of the residues involved in recognition of H3K4me3 compromised in vitro H3K4me3 binding but not in vivo localization of full-length MLL to chromatin sites in target promoters of MEIS1 and HOXA genes. Whereas intact PHD3 finger was necessary for MLL occupancy at these promoters, H3K4me3 binding was critical for MLL transcriptional activity. These results demonstrate that MLL occupancy and target gene activation can be functionally separated. Furthermore, these findings reveal that MLL not only "writes" the H3K4me3 mark but also binds the mark, and this binding is required for the transcriptional maintenance functions of MLL.

Indexed as

Protein Structure, SecondaryTranscription, GeneticAmino Acid SequenceAnimalsCattleCell LineGene Expression RegulationHistonesHumansLysineMethylationModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedMyeloid-Lymphoid Leukemia ProteinNuclear Magnetic Resonance, BiomolecularHistonesLysineMAS1 protein, humanMyeloid-Lymphoid Leukemia ProteinProto-Oncogene MasRecombinant Fusion Proteins

Identifiers

PMID20452361
PMCPMC2886590
OpenAlexW2056228735

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.