Evidence map›Paper›PMID 20448653›Full record

ArticleJournal of human genetics2010

The regulation-of-autophagy pathway may influence Chinese stature variation: evidence from elder adults.

Feng Pan, Xiao-Gang Liu, Yan-Fang Guo, Yuan Chen, Shan-Shan Dong, Chuan Qiu, Zhi-Xin Zhang, Qi Zhou, Tie-Lin Yang, Yan Guo and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of human genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.4field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Compounds isolated fromSaudi journal of biological sciences · 2020
    Article
  2. Autophagy Regulates Craniofacial Bone Acquisition.Calcified tissue international · 2019
    Article
  3. Article
  4. Article
  5. Autophagy as a target for glucocorticoid-induced osteoporosis therapy.Cellular and molecular life sciences : CMLS · 2018
    Review
  6. Achondroplasia: Development, pathogenesis, and therapy.Developmental dynamics : an official publication of the American Association of Anatomists · 2017
    Review
  7. Article
  8. Review
  9. Article
  10. Suppression of autophagy by FIP200 deletion leads to osteopenia in mice through the inhibition of osteoblast terminal differentiation.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2013
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Feng PanThe Key Laboratory of Biomedical Information Engineering of Ministry of Education, and Institute of Molecular Genetics, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, Shaanxi, China.
Xiao-Gang Liu
Yan-Fang Guo
Yuan Chen
Shan-Shan Dong
Chuan Qiu
Zhi-Xin Zhang
Qi Zhou
Tie-Lin Yang
Yan Guo
Xue-Zhen Zhu
Hong-Wen Deng
Xi'an Jiaotong University · CNUniversity of Shanghai for Science and Technology · CN

Funding

Proteome-wide Expression Study of Osteogenic CellsP50AR055081 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2007 to 2012
$5.0M
ROBUST AND POWERFUL TEST OF CANDIDATE GENES TO BONE MASSR01AR050496 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2004 to 2013
$3.8M
Identification of Proteins Important for Male OsteoporosisR01AR057049 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2009 to 2013
$2.4M
Genomic search for bone mass QTLsR01AG026564 · NIA · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2007 to 2010
$2.3M
Proteomics Study of Peripheral Blood Monocytes on OsteroporsisR21AG027110 · NIA · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2006 to 2007
$367k
Alcohol Dependence Genetics in a Large Chinese PedigreeR21AA015973 · NIAAA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2007 to 2008
$345k
Genome-wide association study of periodontitisRC2DE020756 · NIDCR · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN, GENCO, ROBERT J · 2009 to 2009
$173k
Genetics of Osteoporotic Fractures in ChineseR03TW008221 · FIC · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2009 to 2011
$171k
FIC NIH HHS R03 TW008221FIC NIH HHS R03TW008221NIAAA NIH HHS R21 AA015973NIAMS NIH HHS P50 AR055081NIAMS NIH HHS P50AR055081NIAMS NIH HHS R01 AR050496NIAMS NIH HHS R01AR050496NIAMS NIH HHS R01 AR057049NIAMS NIH HHS R01AR057049NIA NIH HHS R01 AG026564NIA NIH HHS R01AG026564NIA NIH HHS R21 AG027110NIDCR NIH HHS RC2 DE020756NIDCR NIH HHS RC2DE020756
6 · The paper itself

Abstract

Recent success of genome-wide association studies (GWASs) on human height variation emphasized the effects of individual loci or genes. In this study, we used a developed pathway-based approach to further test biological pathways for potential association with stature, by examining approximately 370,000 single-nucleotide polymorphisms (SNPs) across the human genome in 618 unrelated elder Han Chinese. A total of 626 biological pathways annotated by any of the three major public pathway databases (KEGG, BioCarta and Ambion GeneAssist Pathway Atlas) were tested. The regulation-of-autophagy (ROA) (nominal P=0.012) pathway was marginally significantly associated with human stature after our family wise error rate multiple-testing correction. We also used 1000 random recruited US whites for further replication. Interestingly, the ROA pathway presented the strongest signals in whites for height variation (nominal P=0.002). The results correspond to biological roles of the ROA pathway in human long bone development and growth. Our findings also implied that multiple-genetic factors may work jointly as a functional unit (pathway), and the traditional GWASs could have missed important genetic information imbedded in those less significant markers.

Indexed as

Genetic VariationAdultAgedAsian PeopleAutophagyBody HeightChinaChromosomes, Human, Pair 9FemaleHaplotypesHumansMaleMetabolic Networks and PathwaysPhysical Chromosome MappingPolymorphism, Single NucleotideUnited States

Identifiers

PMID20448653
PMCPMC2923432
OpenAlexW2055938028

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.