Evidence map›Paper›PMID 20447270›Full record

ArticleMolecular plant pathology2010

The 3'-terminal sequence of Bamboo mosaic virus minus-strand RNA interacts with RNA-dependent RNA polymerase and initiates plus-strand RNA synthesis.

I-Hsuan Chen, Jen-Wen Lin, Yi-Jing Chen, Zi-Chao Wang, Li-Fang Liang, Menghsiao Meng, Yau-Heiu Hsu, Ching-Hsiu Tsai

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant pathology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. The Functional Roles of theFrontiers in microbiology · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

I-Hsuan ChenGraduate Institute of Biotechnology, National Chung Hsing University, Taichung 40227, Taiwan.
Jen-Wen Lin
Yi-Jing Chen
Zi-Chao Wang
Li-Fang Liang
Menghsiao Meng
Yau-Heiu Hsu
Ching-Hsiu Tsai
National Chung Hsing University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A 3'-terminal, 77-nucleotide sequence of Bamboo mosaic virus (BaMV) minus-strand RNA (Ba-77), comprising a 5' stem-loop, a spacer and a 3'-CUUUU sequence, can be used to initiate plus-strand RNA synthesis in vitro. To understand the mechanism of plus-strand RNA synthesis, mutations were introduced in the 5' untranslated region of BaMV RNA, resulting in changes at the 3' end of minus-strand RNA. The results showed that at least three uridylate residues in 3'-CUUUU are required and the changes at the penultimate U are deleterious to viral accumulation in Nicotiana benthamiana protoplasts. Results from UV-crosslinking and in vitro RNA-dependent RNA polymerase competition assays suggested that the replicase preferentially interacts with the stem structure of Ba-77. Finally, CMV/83 + UUUUC, a heterologus RNA, which possesses about 80 nucleotides containing the 3'-CUUUU pentamer terminus, and which folds into a secondary structure similar to that of Ba-77, could be used as template for RNA production by the BaMV replicase complex in vitro.

Indexed as

Adenine NucleotidesBambusaBase SequenceCross-Linking ReagentsGenome, ViralMolecular Sequence DataMosaic VirusesMutationNicotianaNucleic Acid ConformationPlant LeavesPromoter Regions, GeneticProtein Structure, TertiaryProtoplastsRNA-Dependent RNA PolymeraseRNA, ViralAdenine NucleotidesCross-Linking ReagentsRNA-Dependent RNA PolymeraseRNA, ViralUridine

Identifiers

PMID20447270
PMCPMC6640325
OpenAlexW2053094759

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.