Evidence map›Paper›PMID 20443119›Full record

ArticleChromosoma2010

The process of a Y-loss event in an XO/XO mammal, the Ryukyu spiny rat.

Asato Kuroiwa, Yasuko Ishiguchi, Fumio Yamada, Abe Shintaro, Yoichi Matsuda

Abstract read
PubMed Publisher
In one paragraph

Article in Chromosoma, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Compensation of gene dosage on the mammalian X.Development (Cambridge, England) · 2024
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. How to manage without a Y chromosome.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Turnover of mammal sex chromosomes in theProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Review
  13. Article
  14. A brief review of vertebrate sex evolution with a pledge for integrative research: towards 'Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Asato KuroiwaLaboratory of Animal Cytogenetics, Graduate School of Science, Hokkaido University, North 10, West 8, Kita-ku, Sapporo, Japan. asatok@cris.hokudai.ac.jp
Yasuko Ishiguchi
Fumio Yamada
Abe Shintaro
Yoichi Matsuda
Hokkaido University · JPForestry and Forest Products Research Institute · JPMinistry of the Environment · JPNagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ryukyu spiny rat, Tokudaia osimensis, has an XO/XO sex chromosome constitution, lacking a Y chromosome and the mammalian sex-determining gene SRY. To investigate the Y-loss event, we traced three proto-Y-linked genes, RBMY1A1, EIF2S3Y, and KDM5D, in the genome. The original Y-linked RBMY1A1 was lost as well as SRY, and the remaining RBMY1A1 was a processed pseudogene on autosome. In contrast, EIF2S3Y and KDM5D were conserved in genomes of both sexes as a result of their translocation from the Y chromosome to the X chromosome and/or autosomes. Furthermore, these genes were expressed in gonads and brains of both sexes. Our study indicated a loss of Y-linked genes with important male functions to be necessary for the Y chromosome to disappear. These functions might have been retained through the acquisition of new genes, and therefore, the Y-loss has had no harmful effect on the maintenance of this species.

Indexed as

Genes, Y-LinkedTranslocation, GeneticAnimalsBase SequenceChromosome MappingCytogenetic AnalysisDNA-Binding ProteinsFemaleGene ExpressionGenes, sryGenes, X-LinkedHumansIn Situ Hybridization, FluorescenceMaleMeiosisMiceDNA-Binding ProteinsNuclear ProteinsSex-Determining Region Y ProteinSry protein, mouse

Identifiers

PMID20443119
OpenAlexW2020613289

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.