Evidence map›Paper›PMID 20441585›Full record

ArticleBMC medical genomics2010

Genomics and proteomics approaches to the study of cancer-stroma interactions.

Flávia C Rodrigues-Lisoni, Paulo Peitl, Alessandra Vidotto, Giovana M Polachini, José V Maniglia, Juliana Carmona-Raphe, Bianca R Cunha, Tiago Henrique, Caique F Souza, Rodrigo A P Teixeira and 79 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
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  3. A review of standardized high-throughput cardiovascular phenotyping with a link to metabolism in mice.Mammalian genome : official journal of the International Mammalian Genome Society · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

89 authors at 5 institutions in 1 country.

Flávia C Rodrigues-LisoniDepartment of Molecular Biology, School of Medicine (FAMERP), São José do Rio Preto, Brazil.
Paulo Peitl
Alessandra Vidotto
Giovana M Polachini
José V Maniglia
Juliana Carmona-Raphe
Bianca R Cunha
Tiago Henrique
Caique F Souza
Rodrigo A P Teixeira
Erica E Fukuyama
Pedro Michaluart
Marcos B de Carvalho
Sonia M Oliani
Head and Neck Genome Project GENCAPO
Eloiza H Tajara
P M Cury
M B de Carvalho
E Dias-Neto
D L A Figueiredo
E E Fukuyama
J F Góis-Filho
A M Leopoldino
R C M Mamede
P Michaluart-Junior
R A Moyses
F G Nóbrega
M P Nóbrega
F D Nunes
E F B Ojopi
L N Serafini
P Severino
A M A Silva
W A Silva
N J F Silveira
S C O M Souza
E H Tajara
V Wünsch-Filho
A Amar
C M Bandeira
M A Braconi
L G Brandão
R M Brandão
A L Canto
M Cerione
R Cicco
M J Chagas
H Chedid
A Costa
B R Cunha
O A Curioni
C S Fortes
S A Franzi
A P Z Frizzera
D Gazito
P E M Guimarães
C M Kaneto
R V M López
R Macarenco
M R Magalhães
C Meneses
A M C Mercante
D G Pinheiro
G M Polachini
A Rapoport
C O Rodini
F C Rodrigues-Lisoni
R V Rodrigues
L Rossi
A R D Santos
M Santos
F Settani
F A M Silva
I T Silva
T B Souza
E Stabenow
J T Takamori
P J Valentim
A Vidotto
F C A Xavier
F Yamagushi
M L Cominato
P M S Correa
G S Mendes
R Paiva
O Ramos
C Silva
M J Silva
M V C Tarlá
Faculdade de Medicina de São José do Rio Preto · BRUniversidade Estadual Paulista (Unesp) · BRHospital Heliópolis · BRHospital São Paulo · BRUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe development and progression of cancer depend on its genetic characteristics as well as on the interactions with its microenvironment. Understanding these interactions may contribute to diagnostic and prognostic evaluations and to the development of new cancer therapies. Aiming to investigate potential mechanisms by which the tumor microenvironment might contribute to a cancer phenotype, we evaluated soluble paracrine factors produced by stromal and neoplastic cells which may influence proliferation and gene and protein expression.

methodsThe study was carried out on the epithelial cancer cell line (Hep-2) and fibroblasts isolated from a primary oral cancer. We combined a conditioned-medium technique with subtraction hybridization approach, quantitative PCR and proteomics, in order to evaluate gene and protein expression influenced by soluble paracrine factors produced by stromal and neoplastic cells.

resultsWe observed that conditioned medium from fibroblast cultures (FCM) inhibited proliferation and induced apoptosis in Hep-2 cells. In neoplastic cells, 41 genes and 5 proteins exhibited changes in expression levels in response to FCM and, in fibroblasts, 17 genes and 2 proteins showed down-regulation in response to conditioned medium from Hep-2 cells (HCM). Nine genes were selected and the expression results of 6 down-regulated genes (ARID4A, CALR, GNB2L1, RNF10, SQSTM1, USP9X) were validated by real time PCR.

conclusionsA significant and common denominator in the results was the potential induction of signaling changes associated with immune or inflammatory response in the absence of a specific protein.

Indexed as

Gene Expression Regulation, NeoplasticAnnexin A5ApoptosisCell ProliferationDown-RegulationElectrophoresis, Gel, Two-DimensionalFibroblastsGenomicsHep G2 CellsHumansKeratinsMouth NeoplasmsNucleic Acid HybridizationProteomeSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationStromal CellsAnnexin A5KeratinsProteomeVimentin

Identifiers

PMID20441585
PMCPMC2881110
OpenAlexW2017170703

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.