Evidence map›Paper›PMID 20439752›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Structure of the EF-hand domain of polycystin-2 suggests a mechanism for Ca2+-dependent regulation of polycystin-2 channel activity.

Edward T Petri, Andjelka Celic, Scott D Kennedy, Barbara E Ehrlich, Titus J Boggon, Michael E Hodsdon

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Structural Insights and Calcium-Switching Mechanism ofInternational journal of molecular sciences · 2025
    Article
  5. Review
  6. Review
  7. Polycystin Channel Complexes.Annual review of physiology · 2023
    Review
  8. Review
  9. Article
  10. Article
  11. Disrupting polycystin-2 EF hand CaJournal of cell science · 2020
    Article
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. CaInternational journal of molecular sciences · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Edward T PetriDepartment of Pharmacology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA.
Andjelka Celic
Scott D Kennedy
Barbara E Ehrlich
Titus J Boggon
Michael E Hodsdon
Yale University · USUniversity of Rochester · US

Funding

YALE CENTER FOR THE STUDY OF POLYCYSTIC KIDNEY DISEASEP50DK057328 · NIDDK · YALE UNIVERSITY · PI SOMLO, STEFAN · 1999 to 2009
$11.1M
Regulation of cholangiocytes by InsP3 receptor isoformsR01DK061747 · NIDDK · YALE UNIVERSITY · PI EHRLICH, BARBARA E., NATHANSON, MICHAEL H · 2003 to 2012
$3.4M
BIOCHEMICAL ASPECTS OF CHEMOTHERAPYT32CA009085 · NCI · YALE UNIVERSITY · PI CHENG, YUNG-CHI · 1985 to 2009
$2.8M
YALE BIOMEDICAL SUPERCOMPUTER: NEUROSCIENCES10RR019895 · NCRR · YALE UNIVERSITY · PI WILLIAMS, KENNETH ROBERT · 2004 to 2004
$1.6M
Structural Basis of Prolactin Receptor RecognitionR01CA108992 · NCI · YALE UNIVERSITY · PI HODSDON, MICHAEL E · 2005 to 2009
$1.4M
NCI NIH HHS CA009085NCI NIH HHS CA108992NCI NIH HHS R01 CA108992NCI NIH HHS T32 CA009085NCRR NIH HHS RR19895NCRR NIH HHS S10 RR019895NIDDK NIH HHS DK061747NIDDK NIH HHS P50 DK057328NIDDK NIH HHS R01 DK061747
6 · The paper itself

Abstract

The C-terminal cytoplasmic tail of polycystin-2 (PC2/TRPP2), a Ca(2+)-permeable channel, is frequently mutated or truncated in autosomal dominant polycystic kidney disease. We have previously shown that this tail consists of three functional regions: an EF-hand domain (PC2-EF, 720-797), a flexible linker (798-827), and an oligomeric coiled coil domain (828-895). We found that PC2-EF binds Ca(2+) at a single site and undergoes Ca(2+)-dependent conformational changes, suggesting it is an essential element of Ca(2+)-sensitive regulation of PC2 activity. Here we describe the NMR structure and dynamics of Ca(2+)-bound PC2-EF. Human PC2-EF contains a divergent non-Ca(2+)-binding helix-loop-helix (HLH) motif packed against a canonical Ca(2+)-binding EF-hand motif. This HLH motif may have evolved from a canonical EF-hand found in invertebrate PC2 homologs. Temperature-dependent steady-state NOE experiments and NMR R(1) and R(2) relaxation rates correlate with increased molecular motion in the EF-hand, possibly due to exchange between apo and Ca(2+)-bound states, consistent with a role for PC2-EF as a Ca(2+)-sensitive regulator. Structure-based sequence conservation analysis reveals a conserved hydrophobic surface in the same region, which may mediate Ca(2+)-dependent protein interactions. We propose that Ca(2+)-sensing by PC2-EF is responsible for the cooperative nature of PC2 channel activation and inhibition. Based on our results, we present a mechanism of regulation of the Ca(2+) dependence of PC2 channel activity by PC2-EF.

Indexed as

Models, MolecularProtein ConformationAmino Acid SequenceCalciumConserved SequenceEF Hand MotifsHumansMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularPolycystic Kidney DiseasesSequence HomologyTRPP Cation ChannelsCalciumTRPP Cation Channels

Identifiers

PMID20439752
PMCPMC2889120
OpenAlexW1993228729

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.