Evidence map›Paper›PMID 20439496›Full record

ArticleMolecular and cellular biology2010

Corepressor-directed preacetylation of histone H3 in promoter chromatin primes rapid transcriptional switching of cell-type-specific genes in yeast.

Alec M Desimone, Jeffrey D Laney

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  6. Article
  7. Review
  8. Article
  9. The glucose signaling network in yeast.Biochimica et biophysica acta · 2013
    Review
  10. Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Alec M DesimoneDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Box G-L2, Providence, RI 02912, USA.
Jeffrey D Laney
Brown University · US

Funding

TRAINING IN MOLECULAR &CELL BIOLOGY &BIOCHEMISTRYT32GM007601 · NIGMS · BROWN UNIVERSITY · PI MOWRY, KIMBERLY L. · 1985 to 2019
$6.4M
Proteolytic Control Of Yeast Cell TypeR01GM071764 · NIGMS · BROWN UNIVERSITY · PI LANEY, JEFFREY · 2005 to 2009
$1.3M
NIGMS NIH HHS GM71764NIGMS NIH HHS R01 GM071764NIGMS NIH HHS T32 GM007601
6 · The paper itself

Abstract

Switching between alternate states of gene transcription is fundamental to a multitude of cellular regulatory pathways, including those that govern differentiation. In spite of the progress in our understanding of such transitions in gene activity, a major unanswered question is how cells regulate the timing of these switches. Here, we have examined the kinetics of a transcriptional switch that accompanies the differentiation of yeast cells of one mating type into a distinct new cell type. We found that cell-type-specific genes silenced by the alpha2 repressor in the starting state are derepressed to establish the new mating-type-specific gene expression program coincident with the loss of alpha2 from promoters. This rapid derepression does not require the preloading of RNA polymerase II or a preinitiation complex but instead depends upon the Gcn5 histone acetyltransferase. Surprisingly, Gcn5-dependent acetylation of nucleosomes in the promoters of mating-type-specific genes requires the corepressor Ssn6-Tup1 even in the repressed state. Gcn5 partially acetylates the amino-terminal tails of histone H3 in repressed promoters, thereby priming them for rapid derepression upon loss of alpha2. Thus, Ssn6-Tup1 not only efficiently represses these target promoters but also functions to initiate derepression by creating a chromatin state poised for rapid activation.

Indexed as

Gene Expression Regulation, FungalHistonesPromoter Regions, GeneticTranscription, GeneticChromatinCo-Repressor ProteinsHistone AcetyltransferasesNuclear ProteinsNucleosomesp300-CBP-Associated FactorRepressor ProteinsRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsChromatinCo-Repressor ProteinsCYC8 protein, S cerevisiaeGCN5 protein, S cerevisiaeHistone AcetyltransferasesHistonesMOT3 protein, S cerevisiaeNuclear ProteinsNucleosomesp300-CBP-Associated FactorRepressor ProteinsRNA Polymerase IISaccharomyces cerevisiae ProteinsSPT7 protein, S cerevisiaeTranscription FactorsTUP1 protein, S cerevisiae

Identifiers

PMID20439496
PMCPMC2897591
OpenAlexW2078687844

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.