Evidence map›Paper›PMID 20439464›Full record

ArticleThe Journal of biological chemistry2010

Mutagenesis reveals the complex relationships between ATPase rate and the chaperone activities of Escherichia coli heat shock protein 70 (Hsp70/DnaK).

Lyra Chang, Andrea D Thompson, Peter Ung, Heather A Carlson, Jason E Gestwicki

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 71 citations in OpenAlex.

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  13. Inhibitors and chemical probes for molecular chaperone networks.The Journal of biological chemistry · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Lyra ChangUniversity of Michigan, Ann Arbor, Michigan 48109, USA.
Andrea D Thompson
Peter Ung
Heather A Carlson
Jason E Gestwicki
University of Michigan–Ann Arbor · US

Funding

Molecular Chaperones and Small MoleculesR01NS059690 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Jason E Gestwicki · 2008 to 2026
$7.9M
Modulating the fate of tau in the Hsp70 chaperone system.F30AG035464 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THOMPSON, ANDREA DOOLEY · 2009 to 2012
$90k
NIA NIH HHS F30 AG035464NIA NIH HHS F30AG035464NINDS NIH HHS NS059690NINDS NIH HHS R01 NS059690PHS HHS MCB-0844512
6 · The paper itself

Abstract

The Escherichia coli 70-kDa heat shock protein, DnaK, is a molecular chaperone that engages in a variety of cellular activities, including the folding of proteins. During this process, DnaK binds its substrates in coordination with a catalytic ATPase cycle. Both the ATPase and protein folding activities of DnaK are stimulated by its co-chaperones, DnaJ and GrpE. However, it is not yet clear how changes in the stimulated ATPase rate of DnaK impact the folding process. In this study, we performed mutagenesis throughout the nucleotide-binding domain of DnaK to generate a collection of mutants in which the stimulated ATPase rates varied from 0.7 to 13.6 pmol/microg/min(-1). We found that this range was largely established by differences in the ability of the mutants to be stimulated by one or both of the co-chaperones. Next, we explored how changes in ATPase rate might impact refolding of denatured luciferase in vitro and found that the two activities were poorly correlated. Unexpectedly, we found several mutants that refold luciferase normally in the absence of significant ATP turnover, presumably by increasing the flexibility of DnaK. Finally, we tested whether DnaK mutants could complement growth of DeltadnaK E. coli cells under heat shock and found that the ability to refold luciferase was more predictive of in vivo activity than ATPase rate. This study provides insights into how flexibility and co-chaperone interactions affect DnaK-mediated ATP turnover and protein folding.

Indexed as

Adenosine TriphosphatasesCircular DichroismDose-Response Relationship, DrugEscherichia coliEscherichia coli ProteinsHSP70 Heat-Shock ProteinsKineticsModels, BiologicalMolecular ChaperonesMutagenesisMutagenesis, Site-DirectedMutationProtein DenaturationProtein FoldingProtein Structure, SecondaryAdenosine TriphosphatasesdnaK protein, E coliEscherichia coli ProteinsHSP70 Heat-Shock ProteinsMolecular Chaperones

Identifiers

PMID20439464
PMCPMC2898401
OpenAlexW2082140468

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.