Evidence map›Paper›PMID 20435767›Full record

ArticleApplied and environmental microbiology2010

Gene expression in proliferating cells of the dinoflagellate Alexandrium catenella (Dinophyceae).

Eve Toulza, Mi-Sun Shin, Guillaume Blanc, Stéphane Audic, Mohamed Laabir, Yves Collos, Jean-Michel Claverie, Daniel Grzebyk

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 69 citations in OpenAlex.

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  6. Expression of a symbiosis-specific gene inRoyal Society open science · 2017
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  8. Lignocellulose degradation mechanisms across the Tree of Life.Current opinion in chemical biology · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Eve ToulzaLaboratoire Ecosystèmes Lagunaires (UMR 5119 CNRS-UM2-IFREMER-IRD), Université Montpellier 2, CC 093, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France.
Mi-Sun Shin
Guillaume Blanc
Stéphane Audic
Mohamed Laabir
Yves Collos
Jean-Michel Claverie
Daniel Grzebyk
Centre National de la Recherche Scientifique · FRLaboratoire Information Génomique et StructuraleIfremer · FRInstitut de Recherche pour le Développement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the conditions leading to harmful algal blooms, especially those produced by toxic dinoflagellate species, is important for environmental and health safety. In addition to investigations into the environmental conditions necessary for the formation of toxic blooms, we postulate that investigating gene expression in proliferating cells is essential for understanding bloom dynamics. Expressed sequence tags were produced from cultured cells of the toxic dinoflagellate Alexandrium catenella sampled during the initiation phase of growth using Sanger's method and by 454 pyrosequencing. A significant proportion of identified genes (ca. 25%) represented enzymes and proteins that participate in a variety of cellular regulatory mechanisms that may characterize proliferating cells, e.g., control of the cell cycle and division, regulation of transcription, translation and posttranslational protein modifications, signaling, intracellular trafficking, and transport. All of the several genes selected for gene expression assays due to their involvement in metabolism and the cell cycle were overexpressed during exponential growth. These data will be useful for investigating the mechanisms underlying growth and toxin production in toxic Alexandrium species and for studying and monitoring the development of toxic blooms.

Indexed as

Gene Expression RegulationGenes, ProtozoanCell ProliferationComputational BiologyDinoflagellidaGene LibraryPhotosynthesisProtozoan ProteinsRNA, ProtozoanSequence Analysis, DNAProtozoan ProteinsRNA, Protozoan

Identifiers

PMID20435767
PMCPMC2897438
OpenAlexW2043116341

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.