Evidence map›Paper›PMID 20435134›Full record

ArticleGenomics2010

Comparative gene expression analysis in mouse models for multiple sclerosis, Alzheimer's disease and stroke for identifying commonly regulated and disease-specific gene changes.

Vivian Tseveleki, Renee Rubio, Sotiris-Spyros Vamvakas, Joseph White, Era Taoufik, Edwige Petit, John Quackenbush, Lesley Probert

Open access · greenAbstract readComparative Study
In one paragraph

Article in Genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 3 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 3 syntheses or guidelines pooled it, 81 citations in OpenAlex.

  1. Pooled it
  2. Common transcriptional signatures in brain tissue from patients with HIV-associated neurocognitive disorders, Alzheimer's disease, and Multiple Sclerosis.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2012
    Pooled it
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  14. Mapping TRPM7 Function by NS8593.International journal of molecular sciences · 2020
    Review
  15. Association betweenThe Journal of international medical research · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Vivian TsevelekiHellenic Pasteur Institute, Athens, Greece. vtseveleki@pasteur.gr
Renee Rubio
Sotiris-Spyros Vamvakas
Joseph White
Era Taoufik
Edwige Petit
John Quackenbush
Lesley Probert
Pasteur Hellenic Institute · GRBoston University · USCentre National de la Recherche Scientifique · FR

Funding

EXPRESSION PROFILING OF RODENT MODELS OF HUMAN DISEASEU01HL066580 · NHLBI · INSTITUTE FOR GENOMIC RESEARCH · PI QUACKENBUSH, JOHN · 2000 to 2004
$4.9M
NHLBI NIH HHS U01 HL066580
6 · The paper itself

Abstract

The brain responds to injury and infection by activating innate defense and tissue repair mechanisms. Working upon the hypothesis that the brain defense response involves common genes and pathways across diverse pathologies, we analysed global gene expression in brain from mouse models representing three major central nervous system disorders, cerebral stroke, multiple sclerosis and Alzheimer's disease compared to normal brain using DNA microarray expression profiling. A comparison of dysregulated genes across disease models revealed common genes and pathways including key components of estrogen and TGF-beta signaling pathways that have been associated with neuroprotection as well as a neurodegeneration mediator, TRPM7. Further, for each disease model, we discovered collections of differentially expressed genes that provide novel insight into the individual pathology and its associated mechanisms. Our data provide a resource for exploring the complex molecular mechanisms that underlie brain neurodegeneration and a new approach for identifying generic and disease-specific targets for therapy.

Indexed as

Alzheimer DiseaseAnimalsBrainGene Expression RegulationMiceMice, TransgenicMultiple SclerosisOligonucleotide Array Sequence AnalysisReverse Transcriptase Polymerase Chain ReactionSignal TransductionStrokeSystems BiologyTRPM Cation ChannelsTrpm7 protein, mouseTRPM Cation Channels

Identifiers

PMID20435134
PMCPMC4205236
OpenAlexW1979635499

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.