Evidence map›Paper›PMID 20433200›Full record

ArticleBiochemistry2010

Molecular structure of WlbB, a bacterial N-acetyltransferase involved in the biosynthesis of 2,3-diacetamido-2,3-dideoxy-D-mannuronic acid .

James B Thoden, Hazel M Holden

Abstract readComparative Study
In one paragraph

Article in Biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Biochemical investigation of an N-acetyltransferase from Helicobacter pullorum.Protein science : a publication of the Protein Society · 2021
    Article
  6. Article
  7. Article
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  11. Article
  12. Review
  13. Article
  14. Biosynthetic enzymes of unusual microbial sugars.Current opinion in structural biology · 2010
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

James B ThodenDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.
Hazel M Holden
University of Wisconsin–Madison · US

Funding

X-ray Studies of Sugar-Modifying EnzymesR01DK047814 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI HOLDEN, HAZEL M. · 1994 to 2015
$4.3M
X-ray Studies of Sugar-Modifying EnzymesR56DK047814 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI HOLDEN, HAZEL · 2006 to 2006
$88k
NIDDK NIH HHS DK47814NIDDK NIH HHS R01 DK047814NIDDK NIH HHS R56 DK047814
6 · The paper itself

Abstract

The pathogenic bacteria Pseudomonas aeruginosa and Bordetella pertussis contain in their outer membranes the rare sugar 2,3-diacetamido-2,3-dideoxy-d-mannuronic acid. Five enzymes are required for the biosynthesis of this sugar starting from UDP-N-acetylglucosamine. One of these, referred to as WlbB, is an N-acetyltransferase that converts UDP-2-acetamido-3-amino-2,3-dideoxy-d-glucuronic acid (UDP-GlcNAc3NA) to UDP-2,3-diacetamido-2,3-dideoxy-d-glucuronic acid (UDP-GlcNAc3NAcA). Here we report the three-dimensional structure of WlbB from Bordetella petrii. For this analysis, two ternary structures were determined to 1.43 A resolution: one in which the protein was complexed with acetyl-CoA and UDP and the second in which the protein contained bound CoA and UDP-GlcNAc3NA. WlbB adopts a trimeric quaternary structure and belongs to the LbetaH superfamily of N-acyltransferases. Each subunit contains 27 beta-strands, 23 of which form the canonical left-handed beta-helix. There are only two hydrogen bonds that occur between the protein and the GlcNAc3NA moiety, one between O(delta1) of Asn 84 and the sugar C-3' amino group and the second between the backbone amide group of Arg 94 and the sugar C-5' carboxylate. The sugar C-3' amino group is ideally positioned in the active site to attack the si face of acetyl-CoA. Given that there are no protein side chains that can function as general bases within the GlcNAc3NA binding pocket, a reaction mechanism is proposed for WlbB whereby the sulfur of CoA ultimately functions as the proton acceptor required for catalysis.

Indexed as

Acetyl Coenzyme AAcetyltransferasesBacterial Outer Membrane ProteinsBordetellaCatalysisCatalytic DomainCrystallizationCrystallography, X-RayProtein Structure, QuaternarySubstrate SpecificityUridine DiphosphateUronic Acids2,3-diacetamido-2,3-dideoxymannuronic acidAcetyl Coenzyme AAcetyltransferasesBacterial Outer Membrane ProteinsUridine DiphosphateUronic Acids

Identifiers

PMID20433200
PMCPMC2879449
OpenAlexW2067994677

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.