ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2010
An interspecific linkage map of SSR and intronic polymorphism markers in tomato.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 1 of them a synthesis that pooled it.
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Who cites it
46 citing papers in PubMed, 1 synthesis or guideline pooled it, 103 citations in OpenAlex.
- Unraveling the genetic basis of quantitative resistance to diseases in tomato: a meta-QTL analysis and mining of transcript profiles.Plant cell reports · 2024Pooled it
- Streamlining of Simple Sequence Repeat Data Mining Methodologies and Pipelines for Crop Scanning.Plants (Basel, Switzerland) · 2024Review
- Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake).DNA research : an international journal for rapid publication of reports on genes and genomes · 2023Article
- Evaluation of subchronic oral dose toxicity and allergen of freeze-dried powder ofToxicological research · 2023Article
- Technology-driven approaches for meiosis research in tomato and wild relatives.Plant reproduction · 2023Article
- Morphological and molecular characterization of some pumpkin (Cucurbita pepo L.) genotypes collected from Erzincan province of Turkey.Scientific reports · 2022Article
- The entire chloroplast genome sequence ofOpen life sciences · 2022Article
- Development of PCR-based DNA marker for detection of white carrot contamination caused byBreeding science · 2021Article
- Four genetic loci control compact plant size with yellow pear-shaped fruit in ornamental tomato (Solanum lycopersicum L.).The plant genome · 2020Article
- Molecular karyotypes of loquat (Plant methods · 2020Article
- Identification of genomic regions associated with early plant vigour in lentil (Journal of genetics · 2020Article
- Bayesian QTL mapping using genome-wide SSR markers and segregating population derived from a cross of two commercial FTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Efficiency of genomic selection for breeding population design and phenotype prediction in tomato.Heredity · 2017Article
- Rapid identification of candidate genes for resistance to tomato late blight disease using next-generation sequencing technologies.PloS one · 2017Article
- A simulation-based breeding design that uses whole-genome prediction in tomato.Scientific reports · 2016Article
- Nitric Oxide Overproduction in TomatoFrontiers in plant science · 2016Article
- Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato.Plant biotechnology journal · 2016Article
- A reference genetic linkage map of apomictic Hieracium species based on expressed markers derived from developing ovule transcripts.Annals of botany · 2015Article
- Draft genome sequence of eggplant (Solanum melongena L.): the representative solanum species indigenous to the old world.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014Article
- Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants.Breeding science · 2014Article
Corrections and comments
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Authors and funding
14 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Despite the collection and availability of abundant tomato genome sequences, PCR-based markers adapted to large scale analysis have not been developed in tomato species. Therefore, using public genome sequence data in tomato, we developed three types of DNA markers: expressed sequence tag (EST)-derived simple sequence repeat (SSR) markers (TES markers), genome-derived SSR markers (TGS markers) and EST-derived intronic polymorphism markers (TEI markers). A total of 2,047 TES, 3,510 TGS and 674 TEI markers were established and used in the polymorphic analysis of a cultivated tomato (Solanum lycopersicum) 'LA925' and its wild relative Solanum pennellii 'LA716', parents of the Tomato-EXPEN 2000 mapping population. The polymorphic ratios between parents revealed by the TES, TGS and TEI markers were 37.3, 22.6 and 80.0%, respectively. Those showing polymorphisms were used to genotype the Tomato-EXPEN 2000 mapping population, and a high-density genetic linkage map composed of 1,433 new and 683 existing marker loci was constructed on 12 chromosomes, covering 1,503.1 cM. In the present map, 48% of the mapped TGS loci were located within heterochromatic regions, while 18 and 21% of TES and TEI loci, respectively, were located in heterochromatin. The large number of SSR and SNP markers developed in this study provide easily handling genomic tools for molecular breeding in tomato. Information on the DNA markers developed in this study is available at http://www.kazusa.or.jp/tomato/.
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