Evidence map›Paper›PMID 20430815›Full record

ArticleMicrobiology (Reading, England)2010

Role of Hfq in iron-dependent and -independent gene regulation in Neisseria meningitidis.

J R Mellin, Ryan McClure, Delia Lopez, Olivia Green, Bjorn Reinhard, Caroline Genco

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Control ofMicroorganisms · 2020
    Review
  3. Review
  4. Review
  5. Regulation ofFEBS open bio · 2017
    Article
  6. Review
  7. Article
  8. The Hfq regulon ofFEBS open bio · 2017
    Article
  9. UnravelingF1000Research · 2017
    Review
  10. Frontiers in molecular biosciences · 2016
    Article
  11. How do base-pairing small RNAs evolve?FEMS microbiology reviews · 2015
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

J R MellinDepartment of Microbiology, Boston University School of Medicine, Boston, MA 02118, USA.
Ryan McClureDepartment of Microbiology, Boston University School of Medicine, Boston, MA 02118, USA.
Delia LopezDepartment of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Olivia GreenDepartment of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Bjorn ReinhardDepartment of Chemistry and The Photonics Center, Boston University, Boston, MA 02215, USA.
Caroline GencoDepartment of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Boston University · US

Funding

The Gonococcal Fur Regulon: Link to PathogenesisR01AI048611 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI GENCO, CAROLINE A · 2001 to 2012
$3.9M
NIAID NIH HHS AI048611NIAID NIH HHS R01 AI048611
6 · The paper itself

Abstract

In Neisseria meningitidis, iron-responsive gene regulation is mediated primarily by the ferric uptake regulator (Fur) protein. When complexed with iron, Fur represses gene expression by preventing transcription initiation. Fur can also indirectly activate gene expression via the repression of regulatory small RNAs (sRNA). One such Fur- and iron-regulated sRNA, NrrF, was previously identified in N. meningitidis and shown to repress expression of the sdhA and sdhC genes encoding subunits of the succinate dehydrogenase complex. In the majority of Gram-negative bacteria, sRNA-mediated regulation requires a cofactor RNA-binding protein (Hfq) for proper gene regulation and stabilization. In this study, we examined the role of Hfq in NrrF-mediated regulation of the succinate dehydrogenase genes in N. meningitidis and the effect of an hfq mutation on iron-responsive gene regulation more broadly. We first demonstrated that the stability of NrrF, as well as the regulation of sdhC and sdhA in vivo, was unaltered in the hfq mutant. Secondly, we established that iron-responsive gene regulation of the Fur-regulated sodB gene was dependent on Hfq. Finally, we demonstrated that in N. meningitidis, Hfq functions in a global manner to control expression of many ORFs and intergenic regions via iron-independent mechanisms. Collectively these studies demonstrate that in N. meningitidis, iron- and NrrF-mediated regulation of sdhC and sdhA can occur independently of Hfq, although Hfq functions more globally to control regulation of other N. meningitidis genes primarily by iron-independent mechanisms.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsDNA, IntergenicHost Factor 1 ProteinIronMutationNeisseria meningitidisOligonucleotide Array Sequence AnalysisOpen Reading FramesRNA, BacterialSuccinate DehydrogenaseSuperoxide DismutaseBacterial ProteinsDNA, IntergenicHost Factor 1 ProteinIronRNA, BacterialSodB protein, BacteriaSuccinate DehydrogenaseSuperoxide Dismutase

Identifiers

PMID20430815
PMCPMC3068672
OpenAlexW2113543266

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.