ArticleDatabase : the journal of biological databases and curation2010
CyanoClust: comparative genome resources of cyanobacteria and plastids.
Article in Database : the journal of biological databases and curation, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 24 citations in OpenAlex.
- CyanoMapDB: a database integrating experimentally validated protein-protein interactions in cyanobacteria.Plant physiology · 2023Article
- CyanoOmicsDB: an integrated omics database for functional genomic analysis of cyanobacteria.Nucleic acids research · 2022Article
- Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes.Nucleic acids research · 2021Article
- Complex origins of chloroplast membranes with photosynthetic machineries: multiple transfers of genes from divergent organisms at different times or a single endosymbiotic event?Journal of plant research · 2020Article
- BioPS: System for screening and assessment of biofuel-production potential of cyanobacteria.PloS one · 2018Article
- Diverse origins of enzymes involved in the biosynthesis of chloroplast peptidoglycan.Journal of plant research · 2017Article
- CyanoBase: a large-scale update on its 20th anniversary.Nucleic acids research · 2017Article
- Identification of alcohol stress tolerance genes ofBiotechnology for biofuels · 2017Article
- Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms).Current genetics · 2016Article
- Cyanobacterial KnowledgeBase (CKB), a Compendium of Cyanobacterial Genomes and Proteomes.PloS one · 2015Article
- Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum.Journal of plant research · 2014Article
- Identification of substrain-specific mutations by massively parallel whole-genome resequencing of Synechocystis sp. PCC 6803.DNA research : an international journal for rapid publication of reports on genes and genomes · 2012Article
- Genomic structure of the cyanobacterium Synechocystis sp. PCC 6803 strain GT-S.DNA research : an international journal for rapid publication of reports on genes and genomes · 2011Article
- The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage.The Journal of biological chemistry · 2011Article
- Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.DNA research : an international journal for rapid publication of reports on genes and genomes · 2010Article
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cyanobacteria, which perform oxygen-evolving photosynthesis as do chloroplasts of plants and algae, are one of the best-studied prokaryotic phyla and one from which many representative genomes have been sequenced. Lack of a suitable comparative genomic database has been a problem in cyanobacterial genomics because many proteins involved in physiological functions such as photosynthesis and nitrogen fixation are not catalogued in commonly used databases, such as Clusters of Orthologous Proteins (COG). CyanoClust is a database of homolog groups in cyanobacteria and plastids that are produced by the program Gclust. We have developed a web-server system for the protein homology database featuring cyanobacteria and plastids. Database URL: http://cyanoclust.c.u-tokyo.ac.jp/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.