Evidence map›Paper›PMID 20427424›Full record

ArticleNucleic acids research2010

Transcriptional properties of human NANOG1 and NANOG2 in acute leukemic cells.

Irina Eberle, Birgit Pless, Miriam Braun, Theo Dingermann, Rolf Marschalek

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 61 citations in OpenAlex.

  1. Review
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  17. Insights into theInternational journal of biological sciences · 2016
    Review
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Irina EberleInstitute of Pharmaceutical Biology/DCAL/ZAFES/CEF, Goethe-University, Biocenter, Max-von-Laue-Str. 9, 60438 Frankfurt/Main, Germany.
Birgit Pless
Miriam Braun
Theo Dingermann
Rolf Marschalek
Goethe University Frankfurt · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcripts of NANOG and OCT4 have been recently identified in human t(4;11) leukemia and in a model system expressing both t(4;11) fusion proteins. Moreover, downstream target genes of NANOG/OCT4/SOX2 were shown to be transcriptionally activated. However, the NANOG1 gene belongs to a gene family, including a gene tandem duplication (named NANOG2 or NANOGP1) and several pseudogenes (NANOGP2-P11). Thus, it was unclear which of the NANOG family members were transcribed in t(4;11) leukemia cells. 5'-RACE experiments revealed novel 5'-exons of NANOG1 and NANOG2, which could give rise to the expression of two different NANOG1 and three different NANOG2 protein variants. Moreover, a novel PCR-based method was established that allows distinguishing between transcripts deriving from NANOG1, NANOG2 and all other NANOG pseudogenes (P2-P11). By applying this method, we were able to demonstrate that human hematopoietic stem cells and different leukemic cells transcribe NANOG2. Furthermore, we functionally tested NANOG1 and NANOG2 protein variants by recombinant expression in 293 cells. These studies revealed that NANOG1 and NANOG2 protein variants are functionally equivalent and activate a regulatory circuit that activates specific stem cell genes. Therefore, we pose the hypothesis that the transcriptional activation of NANOG2 represents a 'gain-of-stem cell function' in acute leukemia.

Indexed as

Multigene FamilyAcute DiseaseAlternative SplicingBlotting, WesternCell LineCell Line, TumorGene Expression ProfilingHematopoietic Stem CellsHistone-Lysine N-MethyltransferaseHomeodomain ProteinsHumansLeukemiaMyeloid-Lymphoid Leukemia ProteinNanog Homeobox ProteinReverse Transcriptase Polymerase Chain ReactionTranscription FactorsHistone-Lysine N-MethyltransferaseHomeodomain ProteinsKMT2A protein, humanMyeloid-Lymphoid Leukemia ProteinNanog Homeobox ProteinNANOGP1 protein, humanNANOG protein, humanTranscription Factors

Identifiers

PMID20427424
PMCPMC2938211
OpenAlexW2119874027

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.