Evidence map›Paper›PMID 20426688›Full record

ArticleVector borne and zoonotic diseases (Larchmont, N.Y.)2010

Seewis virus: phylogeography of a shrew-borne hantavirus in Siberia, Russia.

Liudmila N Yashina, Sergey A Abramov, Valery V Gutorov, Tamara A Dupal, Anton V Krivopalov, Victor V Panov, Galina A Danchinova, Vladislav V Vinogradov, Ekaterina M Luchnikova, John Hay and 2 more

Open access · greenAbstract read
In one paragraph

Article in Vector borne and zoonotic diseases (Larchmont, N.Y.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Divergent Hantavirus in Somali Shrews (Pathogens (Basel, Switzerland) · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Orthohantaviruses, Emerging Zoonotic Pathogens.Pathogens (Basel, Switzerland) · 2020
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Global Spread of Hemorrhagic Fever Viruses: Predicting Pandemics.Methods in molecular biology (Clifton, N.J.) · 2018
    Article
  16. Genetic Diversity of Artybash Virus in the Laxmann's Shrew (Sorex caecutiens).Vector borne and zoonotic diseases (Larchmont, N.Y.) · 2016
    Article
  17. Article
  18. Hokkaido genotype of Puumala virus in the grey red-backed vole (Myodes rufocanus) and northern red-backed vole (Myodes rutilus) in Siberia.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2015
    Article
  19. Co-circulation of soricid- and talpid-borne hantaviruses in Poland.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2014
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Liudmila N YashinaState Research Center of Virology and Biotechnology Vector, Koltsovo, Russia. yashina@vector.nsc.ru
Sergey A Abramov
Valery V Gutorov
Tamara A Dupal
Anton V Krivopalov
Victor V Panov
Galina A Danchinova
Vladislav V Vinogradov
Ekaterina M Luchnikova
John Hay
Hae Ji Kang
Richard Yanagihara
Institute of Systematics and Ecology of Animals · RUState Research Center of Virology and Biotechnology VECTOR · RUUniversity of Hawaiʻi at Mānoa · USCentral Research Institute of Epidemiology · RUKemerovo State University · RUUniversity at Buffalo, State University of New York · US

Funding

Intraspecies Transmission and Infectivity of Insectivore-Borne HantavirusesR01AI075057 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2008 to 2011
$1.5M
NIAID NIH HHS R01 AI075057NIAID NIH HHS R01AI075057
6 · The paper itself

Abstract

backgroundHantaviral antigens were originally reported more than 20 years ago in tissues of the Eurasian common shrew (Sorex araneus), captured in European and Siberian Russia. The recent discovery of Seewis virus (SWSV) in this soricid species in Switzerland provided an opportunity to investigate its genetic diversity and geographic distribution in Russia.

methodsLung tissues from 45 Eurasian common shrews, 4 Laxmann's shrews (Sorex caecutiens), 3 Siberian large-toothed shrews (Sorex daphaenodon), 9 pygmy shrews (Sorex minutus), 28 tundra shrews (Sorex tundrensis), and 6 Siberian shrews (Crocidura sibirica), captured in 11 localities in Western and Eastern Siberia during June 2007 to September 2008, were analyzed for hantavirus RNA by reverse transcription-polymerase chain reaction.

resultsHantavirus L and S segment sequences, detected in 11 S. araneus, 2 S. tundrensis, and 2 S. daphaenodon, were closely related to SWSV, differing from the prototype mp70 strain by 16.3-20.2% at the nucleotide level and 1.4-1.7% at the amino acid level. Alignment and comparison of nucleotide and amino acid sequences showed an intrastrain difference of 0-11.0% and 0% for the L segment and 0.2-8.5% and 0% for the S segment, respectively. Phylogenetic analysis, using neighbor-joining, maximum-likelihood, and Bayesian methods, showed geographic-specific clustering of SWSV strains in Western and Eastern Siberia.

conclusionsThis is the first definitive report of shrew-borne hantaviruses in Siberia, and demonstrates the impressive distribution of SWSV among phylogenetically related Sorex species. Coevolution and local adaptation of SWSV genetic variants in specific chromosomal races of S. araneus may account for their geographic distribution.

Indexed as

AnimalsDemographyOrthohantavirusPhylogenyPhylogeographyShrewsSiberia

Identifiers

PMID20426688
PMCPMC2979336
OpenAlexW2039770547

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.