Evidence map›Paper›PMID 20426415›Full record

ArticleJournal of the American Chemical Society2010

Functional characterization of TtnD and TtnF, unveiling new insights into tautomycetin biosynthesis.

Yinggang Luo, Wenli Li, Jianhua Ju, Qiuping Yuan, Noel R Peters, F Michael Hoffmann, Sheng-Xiong Huang, Tim S Bugni, Scott Rajski, Hiroyuki Osada and 1 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Structure and Mechanism ofACS catalysis · 2021
    Article
  2. Article
  3. Article
  4. Modified mevalonate pathway of the archaeonProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yinggang LuoDivision of Pharmaceutical Sciences, University of Wisconsin, USA.
Wenli Li
Jianhua Ju
Qiuping Yuan
Noel R Peters
F Michael Hoffmann
Sheng-Xiong Huang
Tim S Bugni
Scott Rajski
Hiroyuki Osada
Ben Shen

Funding

Zeeh Pharmaceutical Experimental StationU19CA113297 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI HOFFMANN, F. MICHAEL · 2005 to 2009
$5.4M
AT-less Type I Polyketide SynthasesR01CA106150 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI SHEN, BEN · 2004 to 2015
$3.3M
NCI NIH HHS CA113297NCI NIH HHS R01 CA106150NCI NIH HHS U19 CA113297
6 · The paper itself

Abstract

The biosynthetic gene cluster for tautomycetin (TTN), a highly potent and selective protein phosphatase (PP) inhibitor isolated from Streptomyces griseochromogenes, has recently been cloned and sequenced. To better understand the transformations responsible for converting the post-polyketide synthase product into the exciting anticancer and immunosuppressive chemotherapeutic candidate TTN, we produced and characterized new analogues resulting from inactivation of two genes, ttnD and ttnF, in S. griseochromogenes. Inactivation of ttnD and ttnF, which encode for putative decarboxylase and dehydratase enzymes, respectively, afforded mutant strains SB13013 and SB13014. The DeltattnD mutant SB13013 accumulated four new TTN analogues, TTN D-1, TTN D-2, TTN D-3, and TTN D-4, whereas the DeltattnF mutant accumulated only one new TTN analogue, TTN F-1. The accumulation of these new TTN analogues defines the function of TtnD and TtnF and the timing of their chemistries in relation to installation of the C5 ketone moiety within TTN. Notably, all new analogues possess a structurally distinguishing carboxylic acid moiety, revealing that TtnD apparently cannot catalyze decarboxylation in the absence of TtnF. Additionally, cytotoxicity and PP inhibition assays reveal the importance of the functional groups installed by TtnDF and, consistent with earlier proposals, the C2''-C5 fragment of TTN to be a critical structural determinant behind the important and unique PP-1 selectivity displayed by TTN.

Indexed as

AlkenesAntineoplastic AgentsBacterial ProteinsCarboxy-LyasesCell Line, TumorEnzyme InhibitorsFuransGene SilencingHumansHydro-LyasesInhibitory Concentration 50LipidsMultigene FamilyMutationPhosphoprotein PhosphatasesStreptomycesAlkenesAntineoplastic AgentsBacterial ProteinsCarboxy-LyasesEnzyme InhibitorsFuransHydro-LyasesLipidsPhosphoprotein Phosphatasestautomycetin

Identifiers

PMID20426415
PMCPMC2876980

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.