ArticleVeterinary research communications2010
Analysis of synonymous codon usage in foot-and-mouth disease virus.
Article in Veterinary research communications, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Comparative chloroplast genomes of Dactylicapnos species: insights into phylogenetic relationships.BMC plant biology · 2024Article
- Characterization and Comparative Analysis of Chloroplast Genomes of Medicinal HerbInternational journal of molecular sciences · 2023Article
- Characterization and Comparative Analysis of Chloroplast Genomes in FiveInternational journal of molecular sciences · 2022Article
- Generation and comparative genomics of synthetic dengue viruses.BMC bioinformatics · 2018Article
- Type I Interferon Induced and Antagonized by Foot-and-Mouth Disease Virus.Frontiers in microbiology · 2018Review
- Analysis of the codon usage pattern in Middle East Respiratory Syndrome Coronavirus.Oncotarget · 2017Article
- Significant differences in terms of codon usage bias between bacteriophage early and late genes: a comparative genomics analysis.BMC genomics · 2017Article
- Comprehensive analysis of the codon usage patterns in the envelope glycoprotein E2 gene of the classical swine fever virus.PloS one · 2017Article
- Article
- Attenuation of tick-borne encephalitis virus using large-scale random codon re-encoding.PLoS pathogens · 2015Article
- Characterization of the porcine epidemic diarrhea virus codon usage bias.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2014Article
- Genetic analysis of the PB1-F2 gene of equine influenza virus.Virus genes · 2013Article
- The effects of the codon usage and translation speed on protein folding of 3D(pol) of foot-and-mouth disease virus.Veterinary research communications · 2013Article
- Selective pressure dominates the synonymous codon usage in parvoviridae.Virus genes · 2013Article
- Article
- Analysis of synonymous codon usage patterns in torque teno sus virus 1 (TTSuV1).Archives of virology · 2013Article
- Comparative [corrected] codon usage between the three main viruses in pestivirus genus and their natural susceptible livestock.Virus genes · 2012Article
- Patterns of synonymous codon usage on human metapneumovirus and its influencing factors.Journal of biomedicine & biotechnology · 2012Article
- The characteristics of the synonymous codon usage in hepatitis B virus and the effects of host on the virus in codon usage pattern.Virology journal · 2011Article
- Comparative study of codon substitution patterns in foot-and-mouth disease virus (serotype O).Experimental & molecular medicine · 2011Article
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In this study, we calculate the relative synonymous codon usage (RSCU) values and codon usage bias (CUB) values to carry out a comparative analysis of codon usage pattern for open reading frames (ORFs) among 85 samples which belong to all seven serotypes of foot-and-mouth disease virus (FMDV). Although the degree of CUB for ORFs is a relatively slight, there is a significant variation for CUB among different serotypes, which is mainly determined by codon usage pattern depending on RSCU. By comparison with RSCU values for all samples, although RSCU values fail to show the relationship of specific-lineage serotype, there are two main genetic populations existing in FMDV, namely (i) serotypes Asia 1, A, C & O; (ii) serotypes SAT 1, 2 & 3. This interesting characteristic may be formed by the mechanism of RNA virus recombination. The analysis of quantitative & qualitative evaluation based on CUB indicates interesting characteristic of codon usage, which suggests that more FMDV genome diversity may exist in specific-lineage serotypes rather than exist randomly. Furthermore, the relationship between amino acids and codon usage pattern indicates that mutation pressure rather than translational selection in nature is the important determinant of the codon usage bias observed. Our work might give some sight into some characteristics of FMDV ORF and some evolutionary information of this virus.
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