Evidence map›Paper›PMID 20424227›Full record

ArticleDiabetes2010

HLA DPA1, DPB1 alleles and haplotypes contribute to the risk associated with type 1 diabetes: analysis of the type 1 diabetes genetics consortium families.

Michael D Varney, Ana Maria Valdes, Joyce A Carlson, Janelle A Noble, Brian D Tait, Persia Bonella, Eva Lavant, Anna Lisa Fear, Anthony Louey, Priscilla Moonsamy and 3 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Diabetes, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 78 citations in OpenAlex.

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  11. IgA nephropathy.Nature reviews. Disease primers · 2023
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Michael D VarneyDepartment of Surgery, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, New York, USA. MVarney@arcbs.redcross.org.au
Ana Maria Valdes
Joyce A Carlson
Janelle A Noble
Brian D Tait
Persia Bonella
Eva Lavant
Anna Lisa Fear
Anthony Louey
Priscilla Moonsamy
Josyf C Mychaleckyj
Henry Erlich
Type 1 Diabetes Genetics Consortium
Australian Red Cross Lifeblood · AUGeneTrace Systems (United States) · USMalmö University · SEKing's College London · GBUniversity of Virginia · US

Funding

Type 1 Diabetes Genetics ConsortiumU01DK062418 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI RICH, STEPHEN S. · 2002 to 2007
$59.8M
The genetic basis of type 1 diabetes autoimmunity in African AmericansR01DK061722 · NIDDK · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI NOBLE, JANELLE A · 2003 to 2013
$3.5M
Role of RAGE in Diabetic Vasculopathy & NephropathyF32DK076345 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REINIGER, NINA · 2006 to 2008
$139k
NIDDK NIH HHS 1F32DK076345-01NIDDK NIH HHS R01 DK061722NIDDK NIH HHS U01 DK062418
6 · The paper itself

Abstract

objectiveTo determine the relative risk associated with DPA1 and DPB1 alleles and haplotypes in type 1 diabetes. RESEARCH DESIGN AND

methodsThe frequency of DPA1 and DPB1 alleles and haplotypes in type 1 diabetic patients was compared to the family based control frequency in 1,771 families directly and conditional on HLA (B)-DRB1-DQA1-DQB1 linkage disequilibrium. A relative predispositional analysis (RPA) was performed in the presence or absence of the primary HLA DR-DQ associations and the contribution of DP haplotype to individual DR-DQ haplotype risks examined.

resultsEight DPA1 and thirty-eight DPB1 alleles forming seventy-four DPA1-DPB1 haplotypes were observed; nineteen DPB1 alleles were associated with multiple DPA1 alleles. Following both analyses, type 1 diabetes susceptibility was significantly associated with DPB1*0301 (DPA1*0103-DPB1*0301) and protection with DPB1*0402 (DPA1*0103-DPB1*0402) and DPA1*0103-DPB1*0101 but not DPA1*0201-DPB1*0101. In addition, DPB1*0202 (DPA1*0103-DPB1*0202) and DPB1*0201 (DPA1*0103-DPB1*0201) were significantly associated with susceptibility in the presence of the high risk and protective DR-DQ haplotypes. Three associations (DPB1*0301, *0402, and *0202) remained statistically significant when only the extended HLA-A1-B8-DR3 haplotype was considered, suggesting that DPB1 alone may delineate the risk associated with this otherwise conserved haplotype.

conclusionsHLA DP allelic and haplotypic diversity contributes significantly to the risk for type 1 diabetes; DPB1*0301 (DPA1*0103-DPB1*0301) is associated with susceptibility and DPB1*0402 (DPA1*0103-DPB1*0402) and DPA1*0103-DPB1*0101 with protection. Additional evidence is presented for the susceptibility association of DPB1*0202 (DPA1*0103-DPB1*0202) and for a contributory role of individual amino acids and DPA1 or a gene in linkage disequilibrium in DR3-DPB1*0101 positive haplotypes.

Indexed as

Diabetes Mellitus, Type 1FamilyGenotypeHaplotypesHLA AntigensHLA-DP alpha-ChainsHLA-DP AntigensHLA-DP beta-ChainsHumansRisk FactorsWhite PeopleHLA AntigensHLA-DPA1 antigenHLA-DP alpha-ChainsHLA-DP AntigensHLA-DPB1 antigenHLA-DP beta-Chains

Identifiers

PMID20424227
PMCPMC2911060
OpenAlexW2145527041

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.