Evidence map›Paper›PMID 20424187›Full record

ArticleBlood2010

Clonal expansion and TCR-independent differentiation shape the HIV-specific CD8+ effector-memory T-cell repertoire in vivo.

Dirk Meyer-Olson, Brenna C Simons, Joseph A Conrad, Rita M Smith, Louise Barnett, Shelly L Lorey, Coley B Duncan, Ramesh Ramalingam, Spyros A Kalams

Abstract read
In one paragraph

Article in Blood, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  8. Multiparameter analysis of stimulated human peripheral blood mononuclear cells: A comparison of mass and fluorescence cytometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2016
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  15. Single cell analysis reveals similar functional competence of dominant and nondominant CD8 T-cell clonotypes.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Dirk Meyer-OlsonKlinik für Immunologie und Rheumatologie, Medizinische Hochschule Hannover, Hanover, Germany. meyer.dirk@mh-hannover.de
Brenna C Simons
Joseph A Conrad
Rita M Smith
Louise Barnett
Shelly L Lorey
Coley B Duncan
Ramesh Ramalingam
Spyros A Kalams

Funding

VIROLOGY COREP30AI054999 · NIAID · VANDERBILT UNIVERSITY · PI D'AQUILA, RICHARD · 2003 to 2011
$10.3M
TCR GENE USAGE AND QUANTITATION OF HIV SPECIFIC CTLR01AI039966 · NIAID · VANDERBILT UNIVERSITY · PI KALAMS, SPYROS A · 1997 to 2006
$3.2M
NIAID NIH HHS 2P30AI054999NIAID NIH HHS P30 AI054999NIAID NIH HHS R01 AI039966NIAID NIH HHS SAK R01AI39966
6 · The paper itself

Abstract

Flexibility of the HIV-specific T-cell receptor repertoire is a hallmark of HIV-1 infection. Altered differentiation of HIV-specific CD45RO(+)/CCR7(-) (TemRO) CD8(+) effector-memory T cells into CD45RA(+)/CCR7(-) (TemRA) CD8(+) effector-memory T cells as well as increased expression of the senescence marker CD57 has been frequently observed HIV-1 infection, but the structural relationship between clonal expansion and T-cell differentiation has not been defined. In this study, we demonstrate that HIV-specific clonotypes have differing degrees of TemRA differentiation but always maintain a significant proportion of TemRO-phenotype cells. These data indicate that structural constraints of the TCR/peptide major histocompatibility complex interaction play a central role in the TemRA differentiation of HIV-specific CD8(+) T cells in chronic HIV-1 infection. Clonotypes with a predominantly TemRA phenotype had a substantial fraction of cells without expression of CD57; and in contrast to the high clonotypic variability of TemRA differentiation, expression of CD57 was highly correlated among T-cell clonotypes within epitope-specific responses, indicating TCR-independent expression of CD57 in vivo. Our data highlight the importance of the structural composition of the TCR repertoire for the effector-memory differentiation of the immune response in chronic viral infections and suggest that TCR-dependent and -independent homeostasis shapes the pathogen-specific effector-memory repertoire in vivo.

Indexed as

Amino Acid SequenceCD57 AntigensCD8-Positive T-LymphocytesCell DifferentiationClone CellsHIV-1HIV InfectionsHumansImmunologic MemoryLeukocyte Common AntigensMolecular Sequence DataPhenotypeReceptors, Antigen, T-CellReceptors, CCR7T-Lymphocyte SubsetsCCR7 protein, humanCD57 AntigensLeukocyte Common AntigensReceptors, Antigen, T-CellReceptors, CCR7

Identifiers

PMID20424187
PMCPMC2913459

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.