Evidence map›Paper›PMID 20424176›Full record

ArticleThe Plant cell2010

Sulfite reductase defines a newly discovered bottleneck for assimilatory sulfate reduction and is essential for growth and development in Arabidopsis thaliana.

Muhammad Sayyar Khan, Florian Heinrich Haas, Arman Allboje Samami, Amin Moghaddas Gholami, Andrea Bauer, Kurt Fellenberg, Michael Reichelt, Robert Hänsch, Ralf R Mendel, Andreas J Meyer and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 178 citations in OpenAlex.

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  13. Cyanide Biodegradation byMolecules (Basel, Switzerland) · 2022
    Article
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  15. Review
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  17. Article
  18. Review
  19. Coordinated bacterial and plant sulfur metabolism inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Muhammad Sayyar KhanHeidelberg Institute for Plant Sciences, University of Heidelberg, 69120 Heidelberg, Germany.
Florian Heinrich Haas
Arman Allboje Samami
Amin Moghaddas Gholami
Andrea Bauer
Kurt Fellenberg
Michael Reichelt
Robert Hänsch
Ralf R Mendel
Andreas J Meyer
Markus Wirtz
Rüdiger Hell
Heidelberg University · DELeibniz-Institute for Food Systems Biology at the Technical University of Munich · DEMax Planck Institute for Chemical Ecology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The role of sulfite reductase (SiR) in assimilatory reduction of inorganic sulfate to sulfide has long been regarded as insignificant for control of flux in this pathway. Two independent Arabidopsis thaliana T-DNA insertion lines (sir1-1 and sir1-2), each with an insertion in the promoter region of SiR, were isolated. sir1-2 seedlings had 14% SiR transcript levels compared with the wild type and were early seedling lethal. sir1-1 seedlings had 44% SiR transcript levels and were viable but strongly retarded in growth. In mature leaves of sir1-1 plants, the levels of SiR transcript, protein, and enzymatic activity ranged between 17 and 28% compared with the wild type. The 28-fold decrease of incorporation of (35)S label into Cys, glutathione, and protein in sir1-1 showed that the decreased activity of SiR generated a severe bottleneck in the assimilatory sulfate reduction pathway. Root sulfate uptake was strongly enhanced, and steady state levels of most of the sulfur-related metabolites, as well as the expression of many primary metabolism genes, were changed in leaves of sir1-1. Hexose and starch contents were decreased, while free amino acids increased. Inorganic carbon, nitrogen, and sulfur composition was also severely altered, demonstrating strong perturbations in metabolism that differed markedly from known sulfate deficiency responses. The results support that SiR is the only gene with this function in the Arabidopsis genome, that optimal activity of SiR is essential for normal growth, and that its downregulation causes severe adaptive reactions of primary and secondary metabolism.

Indexed as

ArabidopsisArabidopsis ProteinsCadmiumCarbonCloning, MolecularDNA, BacterialGene Expression Regulation, PlantGenetic Complementation TestMutagenesis, InsertionalNitrogenOligonucleotide Array Sequence AnalysisOxidoreductases Acting on Sulfur Group DonorsRNA, PlantSulfatesArabidopsis ProteinsCadmiumCarbonDNA, BacterialNitrogenOxidoreductases Acting on Sulfur Group DonorsRNA, PlantSIR protein, ArabidopsisSulfatesT-DNA

Identifiers

PMID20424176
PMCPMC2879758
OpenAlexW2130516163

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.