Evidence map›Paper›PMID 20424004›Full record

ArticlePlant physiology2010

An intron sense suppression construct targeting soybean FAD2-1 requires a double-stranded RNA-producing inverted repeat T-DNA insert.

Andrew Mroczka, Peter D Roberts, Joanne J Fillatti, B Elizabeth Wiggins, Tim Ulmasov, Toni Voelker

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. KeyInternational journal of molecular sciences · 2023
    Article
  4. Article
  5. Association Study of the 5'UTR Intron of theFrontiers in plant science · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Effect of orientation of transcription of a gene in an inverted transferred DNA repeat on transcriptional gene silencing in rice transgenics-a case study.Physiology and molecular biology of plants : an international journal of functional plant biology · 2015
    Article
  10. Article
  11. Posttranscriptional gene silencing in nuclei.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Andrew MroczkaMonsanto Company, Calgene Campus, Davis, CA 95616, USA.
Peter D Roberts
Joanne J Fillatti
B Elizabeth Wiggins
Tim Ulmasov
Toni Voelker
Monsanto (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We demonstrate that the transformation of soybean (Glycine max) with sense suppression constructs using intron sequences from the fatty acid oleyl Delta12 desaturase gene FAD2-1A leads to efficient and specific reduction of FAD2-1 transcripts in developing seeds, increased oleic acid, and decreased polyunsaturated fatty acids. The related FAD2-2 transcripts are only marginally affected. Despite screening a large number of independent transformants, no single-copy efficacious transformants could be found. Invariably, all the least complex transgenic loci have two T-DNA copies in an inverted repeat configuration, centered at the right borders. We show that this T-DNA configuration produces an inverted repeat transcript and that small interfering RNAs accumulate against the target sequence.

Indexed as

Gene SilencingDNA, BacterialDNA, PlantFatty Acid DesaturasesGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGlycine maxIntronsMutagenesis, InsertionalPlant ProteinsPlants, Genetically ModifiedRNA, Double-StrandedRNA, PlantRNA, Small InterferingSeedsTransformation, Geneticdelta-12 fatty acid desaturaseDNA, BacterialDNA, PlantFatty Acid DesaturasesPlant ProteinsRNA, Double-StrandedRNA, PlantRNA, Small InterferingT-DNA

Identifiers

PMID20424004
PMCPMC2879809
OpenAlexW2035018474

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.