Evidence map›Paper›PMID 20421449›Full record

ArticleBlood2010

Pathway discovery in mantle cell lymphoma by integrated analysis of high-resolution gene expression and copy number profiling.

Elena M Hartmann, Elias Campo, George Wright, Georg Lenz, Itziar Salaverria, Pedro Jares, Wenming Xiao, Rita M Braziel, Lisa M Rimsza, Wing-Chung Chan and 10 more

Abstract read
In one paragraph

Article in Blood, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 2 pooled it
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 2 syntheses or guidelines pooled it, 135 citations in OpenAlex.

  1. Pooled it
  2. Non-Hodgkin's lymphomas, version 4.2014.Journal of the National Comprehensive Cancer Network : JNCCN · 2014
    Guideline
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. A Cyclin D1-Dependent Transcriptional Program Predicts Clinical Outcome in Mantle Cell Lymphoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2021
    Article
  19. Molecular Pathogenesis of Mantle Cell Lymphoma.Hematology/oncology clinics of North America · 2020
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 14 institutions in 5 countries.

Elena M HartmannInstitute of Pathology, University of Wuerzburg, Josef-Schneider-Strasse 2, Wuerzburg, Germany.
Elias Campo
George Wright
Georg Lenz
Itziar Salaverria
Pedro Jares
Wenming Xiao
Rita M Braziel
Lisa M Rimsza
Wing-Chung Chan
Dennis D Weisenburger
Jan Delabie
Elaine S Jaffe
Randy D Gascoyne
Sandeep S Dave
Hans-Konrad Mueller-Hermelink
Louis M Staudt
German Ott
Sílvia Beà
Andreas Rosenwald
Universitat de Barcelona · ESUniversity of Würzburg · DENational Cancer Institute · USUniversity of Nebraska Medical Center · USBC Cancer Agency · CACenter for Information Technology · USCharité - Universitätsmedizin Berlin · DEDuke Medical Center · USKiel University · DENational Institutes of Health · USNorwegian Cancer Society · NORobert Bosch Hospital · DESWOG Cancer Research Network · USUniversity of Arizona · US

Funding

Molecular diagnosis and outcome prediction in lymphomaZIABC011006 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI STAUDT, LOUIS · 2009 to 2025
$21.0M
Oncogenic mechanisms and molecular targets in lymphomaZIABC011008 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI STAUDT, LOUIS · 2009 to 2025
$21.0M
Lymphoma Disease Discovery and DefintionZIASC000550 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI JAFFE, ELAINE · 2009 to 2025
$16.9M
Hematopathology DiagnosisZIABC011070 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI JAFFE, ELAINE · 2009 to 2025
$14.5M
Molecular Signatures to Improve Diagnosis and Outcome PrU01CA114778 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI CHAN, WING C. · 2005 to 2009
$8.7M
Computational Tools For Bioinformatics And Genome AnalysisZIACT000260 · CIT · CENTER FOR INFORMATION TECHNOLOGY · PI POWELL, JOHN I · 2009 to 2015
$5.6M
NCI NIH HHS 5 U01 CA114778-03NCI NIH HHS U01 CA114778
6 · The paper itself

Abstract

The genome of mantle cell lymphoma (MCL) is, in addition to the translocation t(11;14), characterized by a high number of secondary chromosomal gains and losses that probably account for the various survival times of MCL patients. We investigated 77 primary MCL tumors with available clinical information using high-resolution RNA expression and genomic profiling and applied our recently developed gene expression and dosage integrator algorithm to identify novel genes and pathways that may be of relevance for the pathobiology of MCL. We show that copy number neutral loss of heterozygosity is common in MCL and targets regions that are frequently affected by deletions. The molecular consequences of genomic copy number changes appear complex, even in genomic loci with identified tumor suppressors, such as the region 9p21 containing the CDKN2A locus. Moreover, the deregulation of novel genes, such as CUL4A, ING1, and MCPH1, may affect the 2 crucial pathogenetic mechanisms in MCL, the disturbance of the proliferation, and DNA damage response pathways. Deregulation of the Hippo pathway may have a pathogenetic role in MCL because decreased expression of its members MOBKL2A, MOBKL2B, and LATS2 was associated with inferior outcome, including an independent validation series of 32 MCLs.

Indexed as

Gene Expression ProfilingGene Expression Regulation, NeoplasticAdultAgedAged, 80 and overAlgorithmsFemaleGene DosageGenes, Tumor SuppressorHomozygoteHumansKaplan-Meier EstimateLoss of HeterozygosityLymphoma, Mantle-CellMaleMiddle AgedLATS2 protein, humanMOB2 protein, humanNerve Tissue ProteinsProtein Serine-Threonine KinasesTumor Suppressor Proteins

Identifiers

PMID20421449
PMCPMC2924229
OpenAlexW2003773799

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.