Evidence map›Paper›PMID 20420693›Full record

ArticleBMC neuroscience2010

Downstream targets of methyl CpG binding protein 2 and their abnormal expression in the frontal cortex of the human Rett syndrome brain.

Joanne H Gibson, Barry Slobedman, Harikrishnan K N, Sarah L Williamson, Dimitri Minchenko, Assam El-Osta, Joshua L Stern, John Christodoulou

Open access · goldAbstract read
In one paragraph

Article in BMC neuroscience, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 7 citations in OpenAlex.

  1. Oxidative stress in Rett syndrome: natural history, genotype, and variants.Redox report : communications in free radical research · 2011
    Trial
  2. Review
  3. Review
  4. Article
  5. Article
  6. Rett Syndrome: Thinking Beyond Brain Borders.Advances in experimental medicine and biology · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Drug Studies on Rett Syndrome: From Bench to Bedside.Journal of autism and developmental disorders · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Joanne H GibsonWestern Sydney Genetics Program, The Children's Hospital at Westmead, Sydney, Australia. jgibson@mit.edu
Barry Slobedman
Harikrishnan K N
Sarah L Williamson
Dimitri Minchenko
Assam El-Osta
Joshua L Stern
John Christodoulou
Children's Hospital at Westmead · AUBaker Heart and Diabetes Institute · AUWestmead Institute · AUUniversity of Sydney · AU

Funding

TERT Promoter Mutations and Telomerase Reactivation in Cancer CellsR01GM099705 · NIGMS · UNIVERSITY OF COLORADO · PI CECH, THOMAS ROBERT · 2012 to 2019
$1.4M
NIGMS NIH HHS R01 GM099705
6 · The paper itself

Abstract

backgroundThe Rett Syndrome (RTT) brain displays regional histopathology and volumetric reduction, with frontal cortex showing such abnormalities, whereas the occipital cortex is relatively less affected.

resultsUsing microarrays and quantitative PCR, the mRNA expression profiles of these two neuroanatomical regions were compared in postmortem brain tissue from RTT patients and normal controls. A subset of genes was differentially expressed in the frontal cortex of RTT brains, some of which are known to be associated with neurological disorders (clusterin and cytochrome c oxidase subunit 1) or are involved in synaptic vesicle cycling (dynamin 1). RNAi-mediated knockdown of MeCP2 in vitro, followed by further expression analysis demonstrated that the same direction of abnormal expression was recapitulated with MeCP2 knockdown, which for cytochrome c oxidase subunit 1 was associated with a functional respiratory chain defect. Chromatin immunoprecipitation (ChIP) analysis showed that MeCP2 associated with the promoter regions of some of these genes suggesting that loss of MeCP2 function may be responsible for their overexpression.

conclusionsThis study has shed more light on the subset of aberrantly expressed genes that result from MECP2 mutations. The mitochondrion has long been implicated in the pathogenesis of RTT, however it has not been at the forefront of RTT research interest since the discovery of MECP2 mutations. The functional consequence of the underexpression of cytochrome c oxidase subunit 1 indicates that this is an area that should be revisited.

Indexed as

AdolescentAdultChildChild, PreschoolClusterinDynamin IElectron Transport Complex IVEnergy MetabolismFemaleGene Expression ProfilingGene Expression RegulationHumansMethyl-CpG-Binding Protein 2MitochondriaMitochondrial DiseasesNerve Tissue ProteinsCLU protein, humanClusterinDynamin IElectron Transport Complex IVMECP2 protein, humanMethyl-CpG-Binding Protein 2Nerve Tissue ProteinsRNA, Messenger

Identifiers

PMID20420693
PMCPMC2881102
OpenAlexW1554357504

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.