Evidence map›Paper›PMID 20420403›Full record

ArticleBiochemistry2010

Mutation of Asn28 disrupts the dimerization and enzymatic activity of SARS 3CL(pro) .

Jennifer Barrila, Sandra B Gabelli, Usman Bacha, L Mario Amzel, Ernesto Freire

Abstract read
In one paragraph

Article in Biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 58 citations in OpenAlex.

  1. The C117D oxidation mimic reveals the monomeric structure of SARS-CoV-2 main protease.Protein science : a publication of the Protein Society · 2026
    Article
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  4. SARS-CoV-2 MNature communications · 2024
    Article
  5. The SARS-CoV-2 MACS synthetic biology · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Pro108Ser mutation of SARS-CoV-2 3CLScientific reports · 2022
    Article
  12. Maturation of the SARS-CoV-2 virus is regulated by dimerization of its main protease.Computational and structural biotechnology journal · 2022
    Article
  13. A genetically encoded BRET-based SARS-CoV-2 MCommunications chemistry · 2022
    Article
  14. Structural and functional significance of the amino acid differences ValInternational journal of biological macromolecules · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jennifer BarrilaDepartment of Biology, Johns Hopkins University, Baltimore, Maryland 21218, USA.
Sandra B Gabelli
Usman Bacha
L Mario Amzel
Ernesto Freire
Johns Hopkins University · US

Funding

STRUCTURE BASED THERMODYNAMIC STUDIES OF HIV1 PROTEASER01GM057144 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI FREIRE, ERNESTO · 1998 to 2012
$5.8M
NIGMS NIH HHS GM57144NIGMS NIH HHS R01 GM057144
6 · The paper itself

Abstract

Coronaviruses are responsible for a significant proportion of annual respiratory and enteric infections in humans and other mammals. The most prominent of these viruses is the severe acute respiratory syndrome coronavirus (SARS-CoV) which causes acute respiratory and gastrointestinal infection in humans. The coronavirus main protease, 3CL(pro), is a key target for broad-spectrum antiviral development because of its critical role in viral maturation and high degree of structural conservation among coronaviruses. Dimerization is an indispensable requirement for the function of SARS 3CL(pro) and is regulated through mechanisms involving both direct and long-range interactions in the enzyme. While many of the binding interactions at the dimerization interface have been extensively studied, those that are important for long-range control are not well-understood. Characterization of these dimerization mechanisms is important for the structure-based design of new treatments targeting coronavirus-based infections. Here we report that Asn28, a residue 11 A from the closest residue in the opposing monomer, is essential for the enzymatic activity and dimerization of SARS 3CL(pro). Mutation of this residue to alanine almost completely inactivates the enzyme and results in a 19.2-fold decrease in the dimerization K(d). The crystallographic structure of the N28A mutant determined at 2.35 A resolution reveals the critical role of Asn28 in maintaining the structural integrity of the active site and in orienting key residues involved in binding at the dimer interface and substrate catalysis. These findings provide deeper insight into complex mechanisms regulating the activity and dimerization of SARS 3CL(pro).

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAsparagineCatalysisCloning, MolecularCoronavirus 3C ProteasesCrystallography, X-RayCysteine EndopeptidasesEnzyme ActivationModels, MolecularMolecular Sequence DataMutationProtein Interaction Domains and MotifsProtein MultimerizationSequence Homology, Amino AcidSevere acute respiratory syndrome-related coronavirusAsparagineCoronavirus 3C ProteasesCysteine EndopeptidasesViral Proteins

Identifiers

PMID20420403
PMCPMC2877132
OpenAlexW2060194734

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.